Mir-8908-P3

MirGeneDB ID

Cfa-Mir-8908-P3

Family name

MIR-8908 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-8908c

Paralogues

Cfa-Mir-8908-P1a1 Cfa-Mir-8908-P1a2 Cfa-Mir-8908-P1b Cfa-Mir-8908-P1c Cfa-Mir-8908-P1d Cfa-Mir-8908-P2 Cfa-Mir-8908-P4a1 Cfa-Mir-8908-P4a2 Cfa-Mir-8908-P4b Cfa-Mir-8908-P4c Cfa-Mir-8908-P5 Cfa-Mir-8908-P6 Cfa-Mir-8908-P7 Cfa-Mir-8908-P8

Orthologues

Node of Origin (locus)

C. familiaris

Node of Origin (family)

C. familiaris

Genome context
(canFam3_add)

chrX: 114675836-114675892 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8908-P3)

Mir-8908-P3 chrX: 114675836-114675892 [-] UCSC Ensembl
Mir-8908-P5 chrX: 114676848-114676903 [-] UCSC Ensembl
Mir-8908-P2 chrX: 114678505-114678561 [-] UCSC Ensembl
Mir-8908-P4a2 chrX: 114679976-114680034 [-] UCSC Ensembl
Mir-8908-P1c chrX: 114680911-114680970 [-] UCSC Ensembl
Mir-8908-P1a2 chrX: 114684100-114684159 [-] UCSC Ensembl
Mir-8908-P4b chrX: 114686169-114686227 [-] UCSC Ensembl
Mir-8908-P1b chrX: 114687030-114687089 [-] UCSC Ensembl
Mir-8908-P4a1 chrX: 114688877-114688935 [-] UCSC Ensembl
Mir-8908-P1a1 chrX: 114689813-114689872 [-] UCSC Ensembl
Mir-8908-P6 chrX: 114717103-114717160 [-] UCSC Ensembl

Seed

AUUAGCA

Precursor
(pre-Mir +30nt flank)

UCUGUUUGAGCCAUGAUGUGUGCAGUGCCCUGCUCAGGAUGGCGCUGAUUACAUACUCUAGGAGUGAUUAGCAUCUGCCUGGGCCGAGUGAUGCUCACUAAGAACCACCGUUUGUGU

Get precursor sequence

Structure

        10          20        30        40        50        
UCUGUUUGAGCCAUGAU--|  U   GU  CCU       AU GC         AUACU 
                   GUG GCA  GC   GCUCAGG  G  GCUGAUUAC     \
                   CAC CGU  UG   CGGGUCC  C  CGAUUAGUG     C
UGUGUUUGCCACCAAGAAU^  U   AG  AGC       GU UA         AGGAU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-8908-P3_5p*

mirBase accession

None

Sequence

0- UGCUCAGGAUGGCGCUGAUUAC -22

Get sequence

Mature sequence

Cfa-Mir-8908-P3_3p

mirBase accession

MIMAT0034433

Sequence

35- GAUUAGCAUCUGCCUGGGCCGA -57

Get sequence

Proposed targets

TargetScanVert: cfa-miR-8908c
miRDB: MIMAT0034433