Mir-154-P13-v2

MirGeneDB ID

Hsa-Mir-154-P13-v2

Family name

MIR-154 (all species)

Seed

UAGUAGA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-411

Paralogues

Hsa-Mir-154-P1 Hsa-Mir-154-P2-v1 Hsa-Mir-154-P2-v2 Hsa-Mir-154-P3a-v1 Hsa-Mir-154-P3a-v2 Hsa-Mir-154-P3b Hsa-Mir-154-P4a Hsa-Mir-154-P4b Hsa-Mir-154-P5 Hsa-Mir-154-P6 Hsa-Mir-154-P7 Hsa-Mir-154-P8 Hsa-Mir-154-P9 Hsa-Mir-154-P10 Hsa-Mir-154-P12 Hsa-Mir-154-P13-v1 Hsa-Mir-154-P14 Hsa-Mir-154-P15 Hsa-Mir-154-P16 Hsa-Mir-154-P17 Hsa-Mir-154-P18 Hsa-Mir-154-P19 Hsa-Mir-154-P20-v1 Hsa-Mir-154-P20-v2 Hsa-Mir-154-P21 Hsa-Mir-154-P22 Hsa-Mir-154-P23 Hsa-Mir-154-P24 Hsa-Mir-154-P25 Hsa-Mir-154-P26 Hsa-Mir-154-P27 Hsa-Mir-154-P28a Hsa-Mir-154-P28b Hsa-Mir-154-P29 Hsa-Mir-154-P30 Hsa-Mir-154-P36

Orthologues

Bta-Mir-154-P13 Cfa-Mir-154-P13 Cpo-Mir-154-P13 Dno-Mir-154-P13 Ete-Mir-154-P13 Mml-Mir-154-P13 Mmu-Mir-154-P13 Ocu-Mir-154-P13 Rno-Mir-154-P13

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(hg38)

chr14: 101023339-101023396 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P13-v2)

Mir-154-P7 chr14: 101022071-101022129 [+] UCSC Ensembl
Mir-154-P13-v2 chr14: 101023339-101023396 [+] UCSC Ensembl
Mir-154-P13-v1 chr14: 101023340-101023395 [+] UCSC Ensembl
Mir-154-P2-v1 chr14: 101023799-101023853 [+] UCSC Ensembl
Mir-154-P2-v2 chr14: 101023800-101023852 [+] UCSC Ensembl
Mir-154-P8 chr14: 101025020-101025076 [+] UCSC Ensembl
Mir-154-P30 chr14: 101025585-101025640 [+] UCSC Ensembl
Mir-154-P3a-v2 chr14: 101025747-101025802 [+] UCSC Ensembl
Mir-154-P3a-v1 chr14: 101025747-101025802 [+] UCSC Ensembl
Mir-154-P26 chr14: 101026035-101026092 [+] UCSC Ensembl
Mir-154-P4a chr14: 101026796-101026855 [+] UCSC Ensembl
Mir-154-P4b chr14: 101027113-101027172 [+] UCSC Ensembl
Mir-154-P18 chr14: 101029648-101029703 [+] UCSC Ensembl
Mir-154-P29 chr14: 101030064-101030120 [+] UCSC Ensembl
Mir-154-P22 chr14: 101031997-101032054 [+] UCSC Ensembl
Mir-154-P19 chr14: 101033768-101033825 [+] UCSC Ensembl
Mir-376-P4 chr14: 101039695-101039752 [+] UCSC Ensembl
Mir-376-P3 chr14: 101040081-101040138 [+] UCSC Ensembl
Mir-154-P23 chr14: 101040234-101040289 [+] UCSC Ensembl
Mir-376-P2 chr14: 101040460-101040517 [+] UCSC Ensembl
Mir-376-P1 chr14: 101040788-101040845 [+] UCSC Ensembl
Mir-154-P28a chr14: 101042991-101043050 [+] UCSC Ensembl
Mir-154-P28b chr14: 101044212-101044271 [+] UCSC Ensembl
Mir-154-P9 chr14: 101045927-101045989 [+] UCSC Ensembl
Mir-154-P17 chr14: 101046469-101046526 [+] UCSC Ensembl
Mir-154-P21 chr14: 101047329-101047392 [+] UCSC Ensembl
Mir-154-P27 chr14: 101047911-101047969 [+] UCSC Ensembl
Mir-544 chr14: 101048676-101048732 [+] UCSC Ensembl
Mir-154-P24 chr14: 101049572-101049631 [+] UCSC Ensembl
Mir-154-P16 chr14: 101052458-101052515 [+] UCSC Ensembl
Mir-154-P10 chr14: 101054316-101054373 [+] UCSC Ensembl
Mir-134 chr14: 101054694-101054754 [+] UCSC Ensembl
Mir-154-P15 chr14: 101055427-101055485 [+] UCSC Ensembl
Mir-154-P3b chr14: 101056233-101056289 [+] UCSC Ensembl
Mir-154-P1 chr14: 101059769-101059826 [+] UCSC Ensembl
Mir-154-P20-v2 chr14: 101060595-101060650 [+] UCSC Ensembl
Mir-154-P20-v1 chr14: 101060596-101060649 [+] UCSC Ensembl
Mir-154-P6 chr14: 101062056-101062115 [+] UCSC Ensembl
Mir-541 chr14: 101064504-101064569 [+] UCSC Ensembl
Mir-154-P36 chr14: 101065314-101065367 [+] UCSC Ensembl
Mir-154-P14 chr14: 101065465-101065519 [+] UCSC Ensembl
Mir-154-P5 chr14: 101065606-101065661 [+] UCSC Ensembl
Mir-154-P12 chr14: 101065925-101065981 [+] UCSC Ensembl
Mir-154-P25 chr14: 101066731-101066786 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUCGGCAUCUCUGUGUGGUACUUGGAGAGAUAGUAGACCGUAUAGCGUACGCUUUAUCUGUGACGUAUGUAACACGGUCCACUAACCCUCAGUAUCAAAUCCAUCCCCGAGGCUCCU

Get precursor sequence

Structure

        10            20        30        40        50        
CCUCGGCAUCUCUGUGU----|     UG   AGA    A      AUA       CUUUA 
                     GGUACU  GAG   UAGU GACCGU   GCGUACG     U
                     CUAUGA  CUC   AUCA CUGGCA   UGUAUGC     C
UCCUCGGAGCCCCUACCUAAA^     --   CCA    C      CAA       AGUGU 
      110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-154-P13-v2_5p

mirBase accession

MIMAT0003329

Sequence

0- AUAGUAGACCGUAUAGCGUACG -22

Get sequence

Proposed targets

microrna.org: MIMAT0003329
TargetScanVert: hsa-miR-411-5p.1
TargetMiner: hsa-miR-411-5p
miRDB: MIMAT0003329

Star sequence

Hsa-Mir-154-P13-v2_3p*

mirBase accession

MIMAT0004813

Sequence

36- UAUGUAACACGGUCCACUAACC -58

Get sequence

Proposed targets

microrna.org: MIMAT0004813
TargetScanVert: hsa-miR-411-3p
TargetMiner: hsa-miR-411-3p
miRDB: MIMAT0004813