Mir-154-P28a

MirGeneDB ID

Hsa-Mir-154-P28a

Family name

MIR-154 (all species)

Seed

UAUACAG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-1185-1

Paralogues

Hsa-Mir-154-P1 Hsa-Mir-154-P2-v1 Hsa-Mir-154-P2-v2 Hsa-Mir-154-P3a-v1 Hsa-Mir-154-P3a-v2 Hsa-Mir-154-P3b Hsa-Mir-154-P4a Hsa-Mir-154-P4b Hsa-Mir-154-P5 Hsa-Mir-154-P6 Hsa-Mir-154-P7 Hsa-Mir-154-P8 Hsa-Mir-154-P9 Hsa-Mir-154-P10 Hsa-Mir-154-P12 Hsa-Mir-154-P13-v1 Hsa-Mir-154-P13-v2 Hsa-Mir-154-P14 Hsa-Mir-154-P15 Hsa-Mir-154-P16 Hsa-Mir-154-P17 Hsa-Mir-154-P18 Hsa-Mir-154-P19 Hsa-Mir-154-P20-v1 Hsa-Mir-154-P20-v2 Hsa-Mir-154-P21 Hsa-Mir-154-P22 Hsa-Mir-154-P23 Hsa-Mir-154-P24 Hsa-Mir-154-P25 Hsa-Mir-154-P26 Hsa-Mir-154-P27 Hsa-Mir-154-P28b Hsa-Mir-154-P29 Hsa-Mir-154-P30 Hsa-Mir-154-P36

Orthologues

Bta-Mir-154-P28 Cfa-Mir-154-P28 Cpo-Mir-154-P28 Ete-Mir-154-P28 Mml-Mir-154-P28a

Node of Origin (locus)

Catarrhini

Node of Origin (family)

Eutheria

Genome context
(hg38)

chr14: 101042991-101043050 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P28a)

Mir-154-P7 chr14: 101022071-101022129 [+] UCSC Ensembl
Mir-154-P13-v2 chr14: 101023339-101023396 [+] UCSC Ensembl
Mir-154-P13-v1 chr14: 101023340-101023395 [+] UCSC Ensembl
Mir-154-P2-v1 chr14: 101023799-101023853 [+] UCSC Ensembl
Mir-154-P2-v2 chr14: 101023800-101023852 [+] UCSC Ensembl
Mir-154-P8 chr14: 101025020-101025076 [+] UCSC Ensembl
Mir-154-P30 chr14: 101025585-101025640 [+] UCSC Ensembl
Mir-154-P3a-v2 chr14: 101025747-101025802 [+] UCSC Ensembl
Mir-154-P3a-v1 chr14: 101025747-101025802 [+] UCSC Ensembl
Mir-154-P26 chr14: 101026035-101026092 [+] UCSC Ensembl
Mir-154-P4a chr14: 101026796-101026855 [+] UCSC Ensembl
Mir-154-P4b chr14: 101027113-101027172 [+] UCSC Ensembl
Mir-154-P18 chr14: 101029648-101029703 [+] UCSC Ensembl
Mir-154-P29 chr14: 101030064-101030120 [+] UCSC Ensembl
Mir-154-P22 chr14: 101031997-101032054 [+] UCSC Ensembl
Mir-154-P19 chr14: 101033768-101033825 [+] UCSC Ensembl
Mir-376-P4 chr14: 101039695-101039752 [+] UCSC Ensembl
Mir-376-P3 chr14: 101040081-101040138 [+] UCSC Ensembl
Mir-154-P23 chr14: 101040234-101040289 [+] UCSC Ensembl
Mir-376-P2 chr14: 101040460-101040517 [+] UCSC Ensembl
Mir-376-P1 chr14: 101040788-101040845 [+] UCSC Ensembl
Mir-154-P28a chr14: 101042991-101043050 [+] UCSC Ensembl
Mir-154-P28b chr14: 101044212-101044271 [+] UCSC Ensembl
Mir-154-P9 chr14: 101045927-101045989 [+] UCSC Ensembl
Mir-154-P17 chr14: 101046469-101046526 [+] UCSC Ensembl
Mir-154-P21 chr14: 101047329-101047392 [+] UCSC Ensembl
Mir-154-P27 chr14: 101047911-101047969 [+] UCSC Ensembl
Mir-544 chr14: 101048676-101048732 [+] UCSC Ensembl
Mir-154-P24 chr14: 101049572-101049631 [+] UCSC Ensembl
Mir-154-P16 chr14: 101052458-101052515 [+] UCSC Ensembl
Mir-154-P10 chr14: 101054316-101054373 [+] UCSC Ensembl
Mir-134 chr14: 101054694-101054754 [+] UCSC Ensembl
Mir-154-P15 chr14: 101055427-101055485 [+] UCSC Ensembl
Mir-154-P3b chr14: 101056233-101056289 [+] UCSC Ensembl
Mir-154-P1 chr14: 101059769-101059826 [+] UCSC Ensembl
Mir-154-P20-v2 chr14: 101060595-101060650 [+] UCSC Ensembl
Mir-154-P20-v1 chr14: 101060596-101060649 [+] UCSC Ensembl
Mir-154-P6 chr14: 101062056-101062115 [+] UCSC Ensembl
Mir-541 chr14: 101064504-101064569 [+] UCSC Ensembl
Mir-154-P36 chr14: 101065314-101065367 [+] UCSC Ensembl
Mir-154-P14 chr14: 101065465-101065519 [+] UCSC Ensembl
Mir-154-P5 chr14: 101065606-101065661 [+] UCSC Ensembl
Mir-154-P12 chr14: 101065925-101065981 [+] UCSC Ensembl
Mir-154-P25 chr14: 101066731-101066786 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUCUUUGAGCCACUCUUUGGUACUUGAAGAGAGGAUACCCUUUGUAUGUUCACUUGAUUAAUGGCGAAUAUACAGGGGGAGACUCUUAUUUGCGUAUCAAACUCUGUCGAGGAAGACGC

Get precursor sequence

Structure

        10          20         30        40        50         
GCUCUUUGAGCCACUCU--       U    -|    GAUA              ACUUGA 
                   UUGGUAC UGAA GAGAG    CCCUUUGUAUGUUC      U
                   AACUAUG GUUU UUCUC    GGGGGACAUAUAAG      U
CGCAGAAGGAGCUGUCUCA       C    A^    AGA-              CGGUAA 
.       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Star sequence

Hsa-Mir-154-P28a_5p*

mirBase accession

MIMAT0005798

Sequence

0- AGAGGAUACCCUUUGUAUGUUC -22

Get sequence

Proposed targets

microrna.org: MIMAT0005798
TargetScanVert: hsa-miR-1185-5p
TargetMiner: hsa-miR-1185-5p
miRDB: MIMAT0005798

Mature sequence

Hsa-Mir-154-P28a_3p

mirBase accession

MIMAT0022838

Sequence

38- AUAUACAGGGGGAGACUCUUAU -60

Get sequence

Proposed targets

TargetScanVert: hsa-miR-1185-1-3p
TargetMiner: hsa-miR-1185-1-3p
miRDB: MIMAT0022838