Mir-154-P3b

MirGeneDB ID

Hsa-Mir-154-P3b

Family name

MIR-154 (all species)

Seed

CCAAUAC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-323b

Paralogues

Hsa-Mir-154-P1 Hsa-Mir-154-P2-v1 Hsa-Mir-154-P2-v2 Hsa-Mir-154-P3a-v1 Hsa-Mir-154-P3a-v2 Hsa-Mir-154-P4a Hsa-Mir-154-P4b Hsa-Mir-154-P5 Hsa-Mir-154-P6 Hsa-Mir-154-P7 Hsa-Mir-154-P8 Hsa-Mir-154-P9 Hsa-Mir-154-P10 Hsa-Mir-154-P12 Hsa-Mir-154-P13-v1 Hsa-Mir-154-P13-v2 Hsa-Mir-154-P14 Hsa-Mir-154-P15 Hsa-Mir-154-P16 Hsa-Mir-154-P17 Hsa-Mir-154-P18 Hsa-Mir-154-P19 Hsa-Mir-154-P20-v1 Hsa-Mir-154-P20-v2 Hsa-Mir-154-P21 Hsa-Mir-154-P22 Hsa-Mir-154-P23 Hsa-Mir-154-P24 Hsa-Mir-154-P25 Hsa-Mir-154-P26 Hsa-Mir-154-P27 Hsa-Mir-154-P28a Hsa-Mir-154-P28b Hsa-Mir-154-P29 Hsa-Mir-154-P30 Hsa-Mir-154-P36

Orthologues

Bta-Mir-154-P3b Cfa-Mir-154-P3b Cpo-Mir-154-P3b Dno-Mir-154-P3b Mml-Mir-154-P3b

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(hg38)

chr14: 101056233-101056289 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P3b)

Mir-154-P7 chr14: 101022071-101022129 [+] UCSC Ensembl
Mir-154-P13-v2 chr14: 101023339-101023396 [+] UCSC Ensembl
Mir-154-P13-v1 chr14: 101023340-101023395 [+] UCSC Ensembl
Mir-154-P2-v1 chr14: 101023799-101023853 [+] UCSC Ensembl
Mir-154-P2-v2 chr14: 101023800-101023852 [+] UCSC Ensembl
Mir-154-P8 chr14: 101025020-101025076 [+] UCSC Ensembl
Mir-154-P30 chr14: 101025585-101025640 [+] UCSC Ensembl
Mir-154-P3a-v2 chr14: 101025747-101025802 [+] UCSC Ensembl
Mir-154-P3a-v1 chr14: 101025747-101025802 [+] UCSC Ensembl
Mir-154-P26 chr14: 101026035-101026092 [+] UCSC Ensembl
Mir-154-P4a chr14: 101026796-101026855 [+] UCSC Ensembl
Mir-154-P4b chr14: 101027113-101027172 [+] UCSC Ensembl
Mir-154-P18 chr14: 101029648-101029703 [+] UCSC Ensembl
Mir-154-P29 chr14: 101030064-101030120 [+] UCSC Ensembl
Mir-154-P22 chr14: 101031997-101032054 [+] UCSC Ensembl
Mir-154-P19 chr14: 101033768-101033825 [+] UCSC Ensembl
Mir-376-P4 chr14: 101039695-101039752 [+] UCSC Ensembl
Mir-376-P3 chr14: 101040081-101040138 [+] UCSC Ensembl
Mir-154-P23 chr14: 101040234-101040289 [+] UCSC Ensembl
Mir-376-P2 chr14: 101040460-101040517 [+] UCSC Ensembl
Mir-376-P1 chr14: 101040788-101040845 [+] UCSC Ensembl
Mir-154-P28a chr14: 101042991-101043050 [+] UCSC Ensembl
Mir-154-P28b chr14: 101044212-101044271 [+] UCSC Ensembl
Mir-154-P9 chr14: 101045927-101045989 [+] UCSC Ensembl
Mir-154-P17 chr14: 101046469-101046526 [+] UCSC Ensembl
Mir-154-P21 chr14: 101047329-101047392 [+] UCSC Ensembl
Mir-154-P27 chr14: 101047911-101047969 [+] UCSC Ensembl
Mir-544 chr14: 101048676-101048732 [+] UCSC Ensembl
Mir-154-P24 chr14: 101049572-101049631 [+] UCSC Ensembl
Mir-154-P16 chr14: 101052458-101052515 [+] UCSC Ensembl
Mir-154-P10 chr14: 101054316-101054373 [+] UCSC Ensembl
Mir-134 chr14: 101054694-101054754 [+] UCSC Ensembl
Mir-154-P15 chr14: 101055427-101055485 [+] UCSC Ensembl
Mir-154-P3b chr14: 101056233-101056289 [+] UCSC Ensembl
Mir-154-P1 chr14: 101059769-101059826 [+] UCSC Ensembl
Mir-154-P20-v2 chr14: 101060595-101060650 [+] UCSC Ensembl
Mir-154-P20-v1 chr14: 101060596-101060649 [+] UCSC Ensembl
Mir-154-P6 chr14: 101062056-101062115 [+] UCSC Ensembl
Mir-541 chr14: 101064504-101064569 [+] UCSC Ensembl
Mir-154-P36 chr14: 101065314-101065367 [+] UCSC Ensembl
Mir-154-P14 chr14: 101065465-101065519 [+] UCSC Ensembl
Mir-154-P5 chr14: 101065606-101065661 [+] UCSC Ensembl
Mir-154-P12 chr14: 101065925-101065981 [+] UCSC Ensembl
Mir-154-P25 chr14: 101066731-101066786 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGCAGUGCCACCUCAUGGUACUCGGAGGGAGGUUGUCCGUGGUGAGUUCGCAUUAUUUAAUGAUGCCCAAUACACGGUCGACCUCUUUUCGGUAUCAGAUCUCACCAGGUGUCUUC

Get precursor sequence

Structure

        10           20        30        40        50         
GAGCAGUGCCACCUCAU---|    U             U     GUGAGUUC   UUAUU 
                    GGUAC CGGAGGGAGGUUG CCGUG        GCA     \
                    CUAUG GCUUUUCUCCAGC GGCAC        CGU     U
CUUCUGUGGACCACUCUAGA^    -             U     AUAACC--   AGUAA 
     110       100         90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Star sequence

Hsa-Mir-154-P3b_5p*

mirBase accession

MIMAT0001630

Sequence

0- AGGUUGUCCGUGGUGAGUUCGCA -23

Get sequence

Proposed targets

microrna.org: MIMAT0001630
TargetScanVert: hsa-miR-323b-5p
TargetMiner: hsa-miR-323b-5p
miRDB: MIMAT0001630

Mature sequence

Hsa-Mir-154-P3b_3p

mirBase accession

MIMAT0015050

Sequence

36- CCCAAUACACGGUCGACCUCU -57

Get sequence

Proposed targets

microrna.org: MIMAT0015050
TargetScanVert: hsa-miR-323b-3p
TargetMiner: hsa-miR-323b-3p
miRDB: MIMAT0015050