MirGeneDB ID | Ete-Mir-154-P28 |
Family name |
MIR-154 (all species) |
Seed |
GAGGAUA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-154-P1
Ete-Mir-154-P2-v1
Ete-Mir-154-P2-v2
Ete-Mir-154-P3a-v1
Ete-Mir-154-P3a-v2
Ete-Mir-154-P4a
Ete-Mir-154-P4b
Ete-Mir-154-P5
Ete-Mir-154-P6
Ete-Mir-154-P7
Ete-Mir-154-P8
Ete-Mir-154-P9
Ete-Mir-154-P10
Ete-Mir-154-P12
Ete-Mir-154-P13
Ete-Mir-154-P14
Ete-Mir-154-P16
Ete-Mir-154-P17
Ete-Mir-154-P18
Ete-Mir-154-P19
Ete-Mir-154-P20-v1
Ete-Mir-154-P20-v2
Ete-Mir-154-P21
Ete-Mir-154-P22
Ete-Mir-154-P24
Ete-Mir-154-P25
Ete-Mir-154-P26
Ete-Mir-154-P27
Ete-Mir-154-P29
Ete-Mir-154-P30
Ete-Mir-154-P31
Ete-Mir-154-P32
Ete-Mir-154-P36
|
Orthologues |
Bta-Mir-154-P28
Cfa-Mir-154-P28
Cpo-Mir-154-P28
Dno-Mir-154-P28c
Dno-Mir-154-P28d
Hsa-Mir-154-P28a
Hsa-Mir-154-P28b
Mml-Mir-154-P28a
Mml-Mir-154-P28b
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980297: 82297259-82297317 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CUCACCGAGGCUGCCCUUUGGUACUUGAAGAGAGGAUACCCUUGUAUGUUCACUCCAUUCAUGACGAAUAUACAGGGGGAGACUCUUAUUUGCGUAUCAAACUCUGUCUGGGAAGGCGC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCACCGAGGCUGCCCU-- U -| GAUA ACUCCA
UUGGUAC UGAA GAGAG CCCUUGUAUGUUC U
AACUAUG GUUU UUCUC GGGGACAUAUAAG U
CGCGGAAGGGUCUGUCUCA C A^ AGAG CAGUAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ete-Mir-154-P28_5p |
mirBase accession | None |
Sequence |
0- AGAGGAUACCCUUGUAUGUUCA -22
Get sequence
|
Co-mature sequence |
Ete-Mir-154-P28_3p |
mirBase accession | None |
Sequence |
36- AAUAUACAGGGGGAGACUCUUAU -59
Get sequence
|