MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-144

Family name MIR-144 (all species)
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-144
Paralogues Mmu-Mir-144-v1 
Orthologues Ami-Mir-144  Cmi-Mir-144  Cpi-Mir-144  Dno-Mir-144  Ete-Mir-144  Gga-Mir-144  Laf-Mir-144  Lch-Mir-144  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Oan-Mir-144  Pbv-Mir-144  Pma-Mir-144  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mm10)		 chr11: 78073010-78073067 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v2)		 Mir-144-v1 chr11: 78073010-78073067 [+] UCSC Ensembl
Mir-144-v2 chr11: 78073010-78073067 [+] UCSC Ensembl
Mir-451 chr11: 78073186-78073227 [+] UCSC Ensembl
Variant

Mmu-Mir-144-v2
Seed GAUAUCA
Precursor
(pre-Mir +30nt flank)		 
UGCUCACCUCCUCCUCCAGGACCUUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGUGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGUACCCCACCUCCAGAGCCUGCCU
Get precursor sequence
Structure
        10         20         30        40        50         
UGCUCACCUCCUCCUCCA-  -|   U      G        A         A  UUGUG 
                   GG ACCU GGCUGG AUAUCAUC UAUACUGUA GU     A
                   CC UGGG CUGAUC UGUAGUAG AUAUGACAU CA     U
UCCGUCCGAGACCUCCACC  A^   U      A        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-144-v2_5p
mirBase accessionMIMAT0016988
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
Get sequence
Proposed targets TargetScanVert: mmu-miR-144-5p
miRDB: MIMAT0016988
Star sequence

Mmu-Mir-144-v2_3p*
mirBase accessionMIMAT0000156
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
Get sequence
Proposed targets microrna.org: MIMAT0000156
TargetScanVert: mmu-miR-144-3p
miRDB: MIMAT0000156
Variant

Mmu-Mir-144-v1
Seed GAUAUCA
Precursor
(pre-Mir +30nt flank)		 
UGCUCACCUCCUCCUCCAGGACCUUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGUGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGUACCCCACCUCCAGAGCCUGCCU
Get precursor sequence
Structure
        10         20         30        40        50         
UGCUCACCUCCUCCUCCA-  -|   U      G        A         AGUUUGUG 
                   GG ACCU GGCUGG AUAUCAUC UAUACUGUA        \
                   CC UGGG CUGAUC UGUAGUAG AUAUGACAU        A
UCCGUCCGAGACCUCCACC  A^   U      A        -         CACAGAGU 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-144-v1_5p
mirBase accessionMIMAT0016988
Sequence 
0- GGAUAUCAUCAUAUACUGUAAG -22
Get sequence
Proposed targets TargetScanVert: mmu-miR-144-5p
miRDB: MIMAT0016988
Co-mature sequence

Mmu-Mir-144-v1_3p
mirBase accessionMIMAT0000156
Sequence 
37- UACAGUAUAGAUGAUGUACUA -58
Get sequence
Proposed targets microrna.org: MIMAT0000156
TargetScanVert: mmu-miR-144-3p
miRDB: MIMAT0000156