Mir-337

MirGeneDB ID

Eca-Mir-337

Family name

MIR-337 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-337

Paralogues

Eca-Mir-337-as

Orthologues

Cja-Mir-337 Cpo-Mir-337-v1 Dno-Mir-337-v1 Hsa-Mir-337-as Hsa-Mir-337-v1 Laf-Mir-337 Mml-Mir-337-as Mml-Mir-337-v1 Mmr-Mir-337-v1 Mmu-Mir-337 Mmu-Mir-337-as Ocu-Mir-337-as Ocu-Mir-337-v1 Pab-Mir-337 Rno-Mir-337 Rno-Mir-337-as

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009171.1: 43177992-43178051 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-337)

Mir-770 CM009171.1: 43150346-43150401 [+] UCSC Ensembl
Mir-493 CM009171.1: 43167648-43167710 [+] UCSC Ensembl
Mir-337-as CM009171.1: 43177990-43178049 [-] UCSC Ensembl
Mir-337 CM009171.1: 43177992-43178051 [+] UCSC Ensembl
Mir-431 CM009171.1: 43183848-43183911 [+] UCSC Ensembl
Mir-433 CM009171.1: 43184725-43184798 [+] UCSC Ensembl
Mir-127 CM009171.1: 43185829-43185884 [+] UCSC Ensembl
Mir-432 CM009171.1: 43187318-43187386 [+] UCSC Ensembl
Mir-136-v2 CM009171.1: 43187505-43187560 [+] UCSC Ensembl
Mir-136-v1 CM009171.1: 43187505-43187560 [+] UCSC Ensembl
Mir-370 CM009171.1: 43212467-43212523 [+] UCSC Ensembl

Seed

UCCUAUG

Precursor
(pre-Mir +30nt flank)

UCGCGGCCGUAGUCAGUAGGUGGGGGGUGAGAACGGCUUCAUACAGGAGCUGAUGCGCAGUUACCCAGCUCCUAUGAGAUGCCUUUCCUCACCCCUUCACCUCGCGCAGCCCCCGGGCCC

Get precursor sequence

Structure

        10         20         30         40        50         
UCGCGGCCGUAGUCAGU-     -        -|  C   U  A  C       GAUGCGC 
                  AGGUG GGGGGUGA GAA GGC UC UA AGGAGCU       \
                  UCCAC UCCCCACU CUU CCG AG GU UCCUCGA       A
CCCGGGCCCCCGACGCGC     U        C^  U   U  A  A       CCCAUUG 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-337_5p*

mirBase accession

MIMAT0013134

Sequence

0- GAACGGCUUCAUACAGGAGCU -21

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Mature sequence

Eca-Mir-337_3p

mirBase accession

MIMAT0013135

Sequence

38- CUCCUAUGAGAUGCCUUUCCUC -60

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