Mir-337-as

MirGeneDB ID

Rno-Mir-337-as

Family name

MIR-337 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-3544

Paralogues

Rno-Mir-337

Orthologues

Cja-Mir-337 Eca-Mir-337 Eca-Mir-337-as Hsa-Mir-337-as Laf-Mir-337 Mml-Mir-337-as Mmu-Mir-337 Mmu-Mir-337-as Ocu-Mir-337-as Pab-Mir-337

Node of Origin (locus)

Euarchontoglires

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133705943-133706003 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-337-as)

Mir-770 chr6: 133682975-133683030 [+] UCSC Ensembl
Mir-673 chr6: 133691391-133691453 [+] UCSC Ensembl
Mir-493 chr6: 133699522-133699583 [+] UCSC Ensembl
Mir-337-as chr6: 133705943-133706003 [-] UCSC Ensembl
Mir-337 chr6: 133705948-133706001 [+] UCSC Ensembl
Mir-540 chr6: 133706216-133706274 [+] UCSC Ensembl
Mir-431 chr6: 133711444-133711507 [+] UCSC Ensembl
Mir-433 chr6: 133712345-133712418 [+] UCSC Ensembl
Mir-127 chr6: 133713452-133713507 [+] UCSC Ensembl
Mir-136-v2 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-136-v1 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-370 chr6: 133739928-133739984 [+] UCSC Ensembl

Seed

GAAAGGC

Precursor
(pre-Mir +30nt flank)

CCGGACGCCACACGCGGUUGAAGGGGGUGAAGAAAGGCAUCAUAUAGGAGCUGAAUGGCUGUGCAAUCAACUCCUGCAUGACGCCGUUCCCACCCCCCAACUUCUCACUACACUGGGACCC

Get precursor sequence

Structure

        10        20          30        40        50        60
CCGGACGCCACACGCGGUUGAA--|      AA   A   A    A      C  AAUGGC 
                        GGGGGUG  GAA GGC UCAU UAGGAG UG      U
                        CCCCCAC  CUU CCG AGUA GUCCUC AC      G
CCCAGGGUCACAUCACUCUUCAAC^      C-   G   C    C      A  UAACGU 
 .       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-337-as_5p

mirBase accession

None

Sequence

0- AGAAAGGCAUCAUAUAGGAGCUG -23

Get sequence

Co-mature sequence

Rno-Mir-337-as_3p

mirBase accession

MIMAT0017798

Sequence

39- ACUCCUGCAUGACGCCGUUCCC -61

Get sequence

Proposed targets

TargetScanVert: rno-miR-3544
miRDB: MIMAT0017798