MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-136

Family name MIR-136 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-136
Paralogues
Orthologues Bta-Mir-136-v1  Cfa-Mir-136-v1  Cja-Mir-136  Cpo-Mir-136-v1  Dno-Mir-136-v1  Eca-Mir-136-v1  Ete-Mir-136-v1  Hsa-Mir-136-v1  Laf-Mir-136  Mml-Mir-136-v1  Mmr-Mir-136-v1  Mmu-Mir-136-v1  Ocu-Mir-136-v1  Pab-Mir-136 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr6: 133716775-133716830 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-136-v1)		 Mir-770 chr6: 133682975-133683030 [+] UCSC Ensembl
Mir-673 chr6: 133691391-133691453 [+] UCSC Ensembl
Mir-493 chr6: 133699522-133699583 [+] UCSC Ensembl
Mir-337-as chr6: 133705943-133706003 [-] UCSC Ensembl
Mir-337 chr6: 133705948-133706001 [+] UCSC Ensembl
Mir-540 chr6: 133706216-133706274 [+] UCSC Ensembl
Mir-431 chr6: 133711444-133711507 [+] UCSC Ensembl
Mir-433 chr6: 133712345-133712418 [+] UCSC Ensembl
Mir-127 chr6: 133713452-133713507 [+] UCSC Ensembl
Mir-136-v2 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-136-v1 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-370 chr6: 133739928-133739984 [+] UCSC Ensembl
Variant

Rno-Mir-136-v1
Seed AUCAUCG
Precursor
(pre-Mir +30nt flank)		 
CUUCAACGGUGUUGGAUGAGCCCUCGGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUAAGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCUAUCAUGUCGUCGGUUGGA
Get precursor sequence
Structure
        10          20        30        40        50        
CUUCAACGGUGUUGGAU--|       G        C     UUU          UUCU 
                   GAGCCCUC GAGGACUC AUUUG   UGAUGAUGGA    \
                   CUUGGGAG CUUCUGAG UAAAC   GCUACUACCU    U
AGGUUGGCUGCUGUACUAU^       A        -     UCU          CGAA 
    110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-136-v1_5p*
mirBase accessionMIMAT0000842
Sequence 
0- ACUCCAUUUGUUUUGAUGAUGGA -23
Get sequence
Proposed targets microrna.org: MIMAT0000842
TargetScanVert: rno-miR-136-5p
miRDB: MIMAT0000842
Mature sequence

Rno-Mir-136-v1_3p
mirBase accessionMIMAT0004733
Sequence 
34- CAUCAUCGUCUCAAAUGAGUCU -56
Get sequence
Proposed targets microrna.org: MIMAT0004733
TargetScanVert: rno-miR-136-3p
miRDB: MIMAT0004733
Variant

Rno-Mir-136-v2
Seed UCAUCGU
Precursor
(pre-Mir +30nt flank)		 
CUUCAACGGUGUUGGAUGAGCCCUCGGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUAAGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCUAUCAUGUCGUCGGUUGGA
Get precursor sequence
Structure
        10          20        30        40        50        
CUUCAACGGUGUUGGAU--|       G        C     UUU         AUUCU 
                   GAGCCCUC GAGGACUC AUUUG   UGAUGAUGG     \
                   CUUGGGAG CUUCUGAG UAAAC   GCUACUACC     U
AGGUUGGCUGCUGUACUAU^       A        -     UCU         UCGAA 
    110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-136-v2_5p*
mirBase accessionMIMAT0000842
Sequence 
0- ACUCCAUUUGUUUUGAUGAUGG -22
Get sequence
Proposed targets microrna.org: MIMAT0000842
TargetScanVert: rno-miR-136-5p
miRDB: MIMAT0000842
Mature sequence

Rno-Mir-136-v2_3p
mirBase accessionMIMAT0004733
Sequence 
35- AUCAUCGUCUCAAAUGAGUCU -56
Get sequence
Proposed targets microrna.org: MIMAT0004733
TargetScanVert: rno-miR-136-3p
miRDB: MIMAT0004733