MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-136

Family name MIR-136 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-136
Paralogues
Orthologues Bta-Mir-136-v1  Cfa-Mir-136-v1  Cja-Mir-136  Cpo-Mir-136-v1  Dno-Mir-136-v1  Ete-Mir-136-v1  Hsa-Mir-136-v1  Laf-Mir-136  Mml-Mir-136-v1  Mmr-Mir-136-v1  Mmu-Mir-136-v1  Ocu-Mir-136-v1  Pab-Mir-136  Rno-Mir-136-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009171.1: 43187505-43187560 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-136-v1)		 Mir-770 CM009171.1: 43150346-43150401 [+] UCSC Ensembl
Mir-493 CM009171.1: 43167648-43167710 [+] UCSC Ensembl
Mir-337-as CM009171.1: 43177990-43178049 [-] UCSC Ensembl
Mir-337 CM009171.1: 43177992-43178051 [+] UCSC Ensembl
Mir-431 CM009171.1: 43183848-43183911 [+] UCSC Ensembl
Mir-433 CM009171.1: 43184725-43184798 [+] UCSC Ensembl
Mir-127 CM009171.1: 43185829-43185884 [+] UCSC Ensembl
Mir-432 CM009171.1: 43187318-43187386 [+] UCSC Ensembl
Mir-136-v2 CM009171.1: 43187505-43187560 [+] UCSC Ensembl
Mir-136-v1 CM009171.1: 43187505-43187560 [+] UCSC Ensembl
Mir-370 CM009171.1: 43212467-43212523 [+] UCSC Ensembl
Variant

Eca-Mir-136-v1
Seed AUCAUCG
Precursor
(pre-Mir +30nt flank)		 
CCACGGUGGUGUUGGAUGAGCCCUCGGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUACGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCUAUCAUGUCGUCGGAUGGA
Get precursor sequence
Structure
        10          20        30        40        50        
CCACGGUGGUGUUGGAU--|       G        C     UUU          UUCU 
                   GAGCCCUC GAGGACUC AUUUG   UGAUGAUGGA    \
                   CUUGGGAG CUUCUGAG UAAAC   GCUACUACCU    U
AGGUAGGCUGCUGUACUAU^       A        -     UCU          CGCA 
    110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-136-v1_5p*
mirBase accessionMIMAT0013128
Sequence 
0- ACUCCAUUUGUUUUGAUGAUGGA -23
Get sequence
Mature sequence

Eca-Mir-136-v1_3p
mirBase accessionNone
Sequence 
34- CAUCAUCGUCUCAAAUGAGUCU -56
Get sequence
Variant

Eca-Mir-136-v2
Seed UCAUCGU
Precursor
(pre-Mir +30nt flank)		 
CCACGGUGGUGUUGGAUGAGCCCUCGGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUACGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCUAUCAUGUCGUCGGAUGGA
Get precursor sequence
Structure
        10          20        30        40        50        
CCACGGUGGUGUUGGAU--|       G        C     UUU         AUUCU 
                   GAGCCCUC GAGGACUC AUUUG   UGAUGAUGG     \
                   CUUGGGAG CUUCUGAG UAAAC   GCUACUACC     U
AGGUAGGCUGCUGUACUAU^       A        -     UCU         UCGCA 
    110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-136-v2_5p*
mirBase accessionMIMAT0013128
Sequence 
0- ACUCCAUUUGUUUUGAUGAUGG -22
Get sequence
Mature sequence

Eca-Mir-136-v2_3p
mirBase accessionNone
Sequence 
35- AUCAUCGUCUCAAAUGAGUCU -56
Get sequence