Mir-337-as

MirGeneDB ID

Eca-Mir-337-as

Family name

MIR-337 (all species)

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Mir-337

Orthologues

Cja-Mir-337 Hsa-Mir-337-as Laf-Mir-337 Mml-Mir-337-as Mmu-Mir-337 Mmu-Mir-337-as Ocu-Mir-337-as Pab-Mir-337 Rno-Mir-337 Rno-Mir-337-as

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009171.1: 43177990-43178049 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-337-as)

Mir-770 CM009171.1: 43150346-43150401 [+] UCSC Ensembl
Mir-493 CM009171.1: 43167648-43167710 [+] UCSC Ensembl
Mir-337-as CM009171.1: 43177990-43178049 [-] UCSC Ensembl
Mir-337 CM009171.1: 43177992-43178051 [+] UCSC Ensembl
Mir-431 CM009171.1: 43183848-43183911 [+] UCSC Ensembl
Mir-433 CM009171.1: 43184725-43184798 [+] UCSC Ensembl
Mir-127 CM009171.1: 43185829-43185884 [+] UCSC Ensembl
Mir-432 CM009171.1: 43187318-43187386 [+] UCSC Ensembl
Mir-136-v2 CM009171.1: 43187505-43187560 [+] UCSC Ensembl
Mir-136-v1 CM009171.1: 43187505-43187560 [+] UCSC Ensembl
Mir-370 CM009171.1: 43212467-43212523 [+] UCSC Ensembl

Seed

GAAAGGC

Precursor
(pre-Mir +30nt flank)

GCCCGGGGGCUGCGCGAGGUGAAGGGGUGAGGAAAGGCAUCUCAUAGGAGCUGGGUAACUGCGCAUCAGCUCCUGUAUGAAGCCGUUCUCACCCCCCACCUACUGACUACGGCCGCGACC

Get precursor sequence

Structure

        10           20        30        40        50          
GCCCGGGGGCUGCGCGA---|   AA          AA   A  UC         GGGUAAC 
                    GGUG  GGGGUGAGGA  GGC UC  AUAGGAGCU       \
                    CCAC  CCCCACUCUU  CCG AG  UGUCCUCGA       U
CCAGCGCCGGCAUCAGUCAU^   C-          G-   A  UA         CUACGCG 
.       110       100         90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-337-as_5p

mirBase accession

None

Sequence

0- GGAAAGGCAUCUCAUAGGAGCU -22

Get sequence

Star sequence

Eca-Mir-337-as_3p*

mirBase accession

None

Sequence

39- CUCCUGUAUGAAGCCGUUCUC -60

Get sequence