MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-337

Family name MIR-337 (all species)
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-337
Paralogues Ocu-Mir-337-as 
Orthologues Cja-Mir-337  Cpo-Mir-337-v1  Dno-Mir-337-v1  Eca-Mir-337  Hsa-Mir-337-v1  Laf-Mir-337  Mml-Mir-337-v1  Mmr-Mir-337-v1  Mmu-Mir-337  Pab-Mir-337  Rno-Mir-337 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0352: 1562-1622 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-337-v1)
Mir-337-as chrUn0352: 1560-1620 [-] UCSC Ensembl
Mir-337-v1 chrUn0352: 1562-1622 [+] UCSC Ensembl
Mir-337-v2 chrUn0352: 1562-1622 [+] UCSC Ensembl
Mir-433 chrUn0352: 6784-6857 [+] UCSC Ensembl
Mir-127 chrUn0352: 7903-7958 [+] UCSC Ensembl
Mir-432 chrUn0352: 9852-9920 [+] UCSC Ensembl
Mir-136-v1 chrUn0352: 10072-10127 [+] UCSC Ensembl
Mir-136-v2 chrUn0352: 10072-10127 [+] UCSC Ensembl
Mir-370 chrUn0352: 31816-31871 [+] UCSC Ensembl
Variant

Ocu-Mir-337-v1

Seed AACGGCU
Precursor
(pre-Mir +30nt flank)
CGCGGCCCGCGGUCGGUAGUUGGGGGAUGGGAACGGCUUCAUACAGGAGUUGAUUGCACAGUCAUCCAGCUCCUAUAUGAUGCCUUUCUUCAUCCUCUUCAACCACGCACAGCCUCCGGAC
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Structure
        10        20           30        40        50         
CGCGGCCCGCGGUCGGUA    --       -|   C   U     C      UGAUUGCA 
                  GUUG  GGGGAUG GGAA GGC UCAUA AGGAGU        C
                  CAAC  CUCCUAC UCUU CCG AGUAU UCCUCG        A
CAGGCCUCCGACACGCAC    UU       U^   U   U     A      ACCUACUG 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
He Ki Te To Wh
Mature sequence

Ocu-Mir-337-v1_5p

mirBase accessionMIMAT0048384
Sequence
0- GAACGGCUUCAUACAGGAGU -20
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Co-mature sequence

Ocu-Mir-337-v1_3p

mirBase accessionMIMAT0048385
Sequence
40- UCCUAUAUGAUGCCUUUCUUC -61
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Variant

Ocu-Mir-337-v2

Seed AACGGCU
Precursor
(pre-Mir +30nt flank)
CGCGGCCCGCGGUCGGUAGUUGGGGGAUGGGAACGGCUUCAUACAGGAGUUGAUUGCACAGUCAUCCAGCUCCUAUAUGAUGCCUUUCUUCAUCCUCUUCAACCACGCACAGCCUCCGGAC
Get precursor sequence
Structure
        10        20           30        40        50         
CGCGGCCCGCGGUCGGUA    --       -|   C   U     C       GAUUGCA 
                  GUUG  GGGGAUG GGAA GGC UCAUA AGGAGUU       C
                  CAAC  CUCCUAC UCUU CCG AGUAU UCCUCGA       A
CAGGCCUCCGACACGCAC    UU       U^   U   U     A       CCUACUG 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
He Ki Te To Wh
Mature sequence

Ocu-Mir-337-v2_5p

mirBase accessionMIMAT0048384
Sequence
0- GAACGGCUUCAUACAGGAGUU -21
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Co-mature sequence

Ocu-Mir-337-v2_3p

mirBase accessionMIMAT0048385
Sequence
39- CUCCUAUAUGAUGCCUUUCUUC -61
Get sequence