MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-1388-as

Family name MIR-1388 (all species)
Species Horse (Equus caballus)
MiRBase ID
Paralogues Eca-Mir-1388 
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009169.1: 50627510-50627570 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1388-as)		 Novel-6 CM009169.1: 50627251-50627308 [-] UCSC Ensembl
Mir-1388 CM009169.1: 50627508-50627568 [-] UCSC Ensembl
Mir-1388-as CM009169.1: 50627510-50627570 [+] UCSC Ensembl
Seed UCUCAGG
Precursor
(pre-Mir +30nt flank)		 
AGCCACUGCUGGGGAAGGGGCAGCAUCUCAUGGGCUGACGAACCUGAGAACGACCCUGGAGACUCACCAUUCUCAGGUUGGACAGUCCUGGAGUCACUGCCCAAGGGCGACCGGUGGAGCC
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Structure
        10          20        30         40        50          
AGCCACUGCUGGGGAAG--      CAU   AU      A-|G          CGACCCUGG 
                   GGGCAG   CUC  GGGCUG  C AACCUGAGAA         \
                   CCCGUC   GAG  CCUGAC  G UUGGACUCUU         A
CCGAGGUGGCCAGCGGGAA      ACU   GU      AG^-          ACCACUCAG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-1388-as_5p*
mirBase accessionNone
Sequence 
0- UGGGCUGACGAACCUGAGAACG -22
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Mature sequence

Eca-Mir-1388-as_3p
mirBase accessionNone
Sequence 
39- UUCUCAGGUUGGACAGUCCUGG -61
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