MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-1388

Family name MIR-1388 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-1388
Paralogues Eca-Mir-1388-as 
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009169.1: 50627508-50627568 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1388)		 Novel-6 CM009169.1: 50627251-50627308 [-] UCSC Ensembl
Mir-1388 CM009169.1: 50627508-50627568 [-] UCSC Ensembl
Mir-1388-as CM009169.1: 50627510-50627570 [+] UCSC Ensembl
Seed GGACUGU
Precursor
(pre-Mir +30nt flank)		 
CUCCACCGGUCGCCCUUGGGCAGUGACUCCAGGACUGUCCAACCUGAGAAUGGUGAGUCUCCAGGGUCGUUCUCAGGUUCGUCAGCCCAUGAGAUGCUGCCCCUUCCCCAGCAGUGGCUGC
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Structure
        10          20        30        40        50          
CUCCACCGGUCGCCCUU--|       A   CA  A   UCC            GUGAGUC 
                   GGGCAGUG CUC  GG CUG   AACCUGAGAAUG       \
                   CCCGUCGU GAG  CC GAC   UUGGACUCUUGC       U
CGUCGGUGACGACCCCUUC^       A   UA  C   UGC            UGGGACC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-1388_5p
mirBase accessionMIMAT0034496
Sequence 
0- AGGACUGUCCAACCUGAGAAUG -22
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Co-mature sequence

Eca-Mir-1388_3p
mirBase accessionNone
Sequence 
39- UUCUCAGGUUCGUCAGCCCAUG -61
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