MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-1388

Family name MIR-1388 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015176067.1: 166941-167001 [-]
Seed GGACUGU
Precursor
(pre-Mir +30nt flank)		 
CGUGGUACUGCCCCGAUGGGGAGUGUUUCAUGGACUGUCUAACCUGAGAAUGGUGAAACAGGAAGGUCAAUCUCAGGUCCGUCAGCCCACAAGACGCUCACCCCAAACCGCUUCUUGCAGC
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Structure
        10         20         30        40        50          
CGUGGUACUGCCCCGAU-   -|       CA   A   UCUA        A  GUGAAAC 
                  GGG GAGUGUUU  UGG CUG    ACCUGAGA UG       \
                  CCC CUCGCAGA  ACC GAC    UGGACUCU AC       A
CGACGUUCUUCGCCAAAC   A^       AC   C   UGCC        A  UGGAAGG 
 .       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Gja-Mir-1388_5p (predicted)
mirBase accessionNone
Sequence 
0- UGGACUGUCUAACCUGAGAAUG -22
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Star sequence

Gja-Mir-1388_3p* (predicted)
mirBase accessionNone
Sequence 
39- AUCUCAGGUCCGUCAGCCCACA -61
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