MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01014492.1: 1428991-1429051 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAACAGGCUGCCCAAGCGAGGGGUGUUUCAAGGACUGUCUAACCUGAGAAUGGUGAGGCAUGAGGGUCAAUCUCAGGUUUGUCAGCCCAUGAGACGCCGCCUCUAGAUCAGGGUGCAGCAG
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Structure
        10         20         30        40        50          
GAACAGGCUGCCCAAGC-    -|        A  A   UCU         A  GUGAGGC 
                  GAGG GGUGUUUCA GG CUG   AACCUGAGA UG       \
                  CUCC CCGCAGAGU CC GAC   UUGGACUCU AC       A
GACGACGUGGGACUAGAU    G^        A  C   UGU         A  UGGGAGU 
 .       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Mature sequence

Spt-Mir-1388_5p (predicted)

mirBase accessionNone
Sequence
0- AGGACUGUCUAACCUGAGAAUG -22
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Star sequence

Spt-Mir-1388_3p* (predicted)

mirBase accessionNone
Sequence
39- AUCUCAGGUUUGUCAGCCCAUG -61
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