MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-1388
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(cavPor3)		 scaffold_119: 424300-424359 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UUCUGCCAGCUGUCCCUGGGUGGUGUCUCCAGGACUGUCCAACCUGAGAAUGUUGCAUCUCCUGGUCAAUCUCAGGUUUGUCAGCCCGUGAGGUGCUGCCCCUUCCCCAGCAUCAGCUGU
Get precursor sequence
Structure
        10          20        30        40        50         
UUCUGCCAGCUGUCCCU--|  UG UG    CA  A   UCC         A  UUGCAU 
                   GGG  G  UCUC  GG CUG   AACCUGAGA UG      C
                   CCC  C  GGAG  CC GAC   UUGGACUCU AC      U
UGUCGACUACGACCCCUUC^  GU GU    UG  C   UGU         A  UGGUCC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-1388_5p
mirBase accessionMIMAT0047425
Sequence 
0- AGGACUGUCCAACCUGAGAAUG -22
Get sequence
Star sequence

Cpo-Mir-1388_3p*
mirBase accessionMIMAT0047426
Sequence 
38- AUCUCAGGUUUGUCAGCCCGUG -60
Get sequence