| MirGeneDB ID | Dre-Mir-202 |
|---|
| Family name |
MIR-202 (all species) |
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| Seed |
UCCUAUG |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-202
|
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| Paralogues |
|
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| Orthologues |
Aca-Mir-202
Ami-Mir-202
Bta-Mir-202
Cfa-Mir-202
Cli-Mir-202
Cmi-Mir-202
Cpi-Mir-202
Cpo-Mir-202
Dno-Mir-202
Ebu-Mir-202
Ete-Mir-202
Gga-Mir-202
Gja-Mir-202
Gmo-Mir-202
Hsa-Mir-202
Lch-Mir-202
Loc-Mir-202
Mal-Mir-202
Mml-Mir-202
Mmu-Mir-202
Mun-Mir-202
Oan-Mir-202
Ocu-Mir-202
Pbv-Mir-202
Pma-Mir-202-P5
Pma-Mir-202-P6
Rno-Mir-202
Sha-Mir-202
Spt-Mir-202
Sto-Mir-202
Tgu-Mir-202
Tni-Mir-202
Xla-Mir-202-P3
Xla-Mir-202-P4
Xtr-Mir-202-P1
Xtr-Mir-202-P2
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(danRer11) |
chr13: 50602649-50602706 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCUCCGUCUGACUCCACUCGCUGUUCCUUUUUCCUAUGCAUAUACCUCUUUGACAUGCUGCUUUAAAGAGGCAUAGGGCAUGGGAAAAUGGGGCGGCAGAGGUUUUCCACCUGAAGAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCUCCGUCUGACUCCACUC-- U A-| A GACAUG
GCUGUUCC UUUUCCUAUGC UAU CCUCUUU \
CGGCGGGG AAAAGGGUACG AUA GGAGAAA C
UAGAAGUCCACCUUUUGGAGA U GG^ C UUUCGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +2 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
| |
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| Mature sequence |
Dre-Mir-202_5p |
| mirBase accession | MIMAT0003406 |
|---|
| Sequence |
0- UUCCUAUGCAUAUACCUCUUU -21
Get sequence
|
|---|
| Star sequence |
Dre-Mir-202_3p* |
| mirBase accession | MIMAT0001864 |
|---|
| Sequence |
36- AGAGGCAUAGGGCAUGGGAAAA -58
Get sequence
|
|---|
| Proposed targets |
TargetScanFish: dre-miR-202
|
|---|
