MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-202-P4

Family name MIR-202 (all species)
Seed UCCUAUG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-202
Paralogues Xla-Mir-202-P3 
Orthologues Aca-Mir-202  Ami-Mir-202  Bta-Mir-202  Cfa-Mir-202  Cli-Mir-202  Cmi-Mir-202  Cpi-Mir-202  Cpo-Mir-202  Dno-Mir-202  Dre-Mir-202  Ebu-Mir-202  Ete-Mir-202  Gga-Mir-202  Gja-Mir-202  Gmo-Mir-202  Hsa-Mir-202  Lch-Mir-202  Loc-Mir-202  Mal-Mir-202  Mml-Mir-202  Mmu-Mir-202  Mun-Mir-202  Oan-Mir-202  Ocu-Mir-202  Pbv-Mir-202  Rno-Mir-202  Sha-Mir-202  Spt-Mir-202  Sto-Mir-202  Tgu-Mir-202  Tni-Mir-202 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030737.1: 16859612-16859669 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUACAGUGAAUGCACUCGCUGUUCCUUUUUCCUAUGCAUAUACCUCUUUGAAUAAUGAAUGUAAAGAGGCAUAGGGCAUGGGAAAAUGGGGCAGCCGAGCCUCUCUGCAGUACUAG
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Structure
        10          20        30        40         50        
UGGUACAGUGAAUGCAC-  -        U           A-|  A       GAAUAA 
                  UC GCUGUUCC UUUUCCUAUGC  UAU CCUCUUU      \
                  AG CGACGGGG AAAAGGGUACG  AUA GGAGAAA      U
GAUCAUGACGUCUCUCCG  C        U           GG^  C       UGUAAG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-202-P4_5p

mirBase accessionMIMAT0046522
Sequence
0- UUCCUAUGCAUAUACCUCUUU -21
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Star sequence

Xla-Mir-202-P4_3p* (predicted)

mirBase accessionMIMAT0046523
Sequence
36- AGAGGCAUAGGGCAUGGGAAAA -58
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