MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-202-P3

Family name MIR-202 (all species)
Seed UCCUAUG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-202-P4 
Orthologues Aca-Mir-202  Ami-Mir-202  Bta-Mir-202  Cfa-Mir-202  Cli-Mir-202  Cmi-Mir-202  Cpi-Mir-202  Cpo-Mir-202  Dno-Mir-202  Dre-Mir-202  Ebu-Mir-202  Ete-Mir-202  Gga-Mir-202  Gja-Mir-202  Gmo-Mir-202  Hsa-Mir-202  Lch-Mir-202  Loc-Mir-202  Mal-Mir-202  Mml-Mir-202  Mmu-Mir-202  Mun-Mir-202  Oan-Mir-202  Ocu-Mir-202  Pbv-Mir-202  Rno-Mir-202  Sha-Mir-202  Spt-Mir-202  Sto-Mir-202  Tgu-Mir-202  Tni-Mir-202 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030736.1: 21772236-21772293 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUAUGGUGCAUGCACUCGCUCUUCCUUUUUCCUAUGCAUAUACCUCUUUGAAAAAUAAAUGUAAAGAGGCAUAGGGCAUGGGAAAAUGGGGCAGCUGAGCCUCUCUGCAGGACUAG
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Structure
        10          20        30        40         50        
UAUUAUGGUGCAUGCACUC--   C    U           A-|  A       GAAAAA 
                     GCU UUCC UUUUCCUAUGC  UAU CCUCUUU      \
                     CGA GGGG AAAAGGGUACG  AUA GGAGAAA      U
GAUCAGGACGUCUCUCCGAGU   C    U           GG^  C       UGUAAA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-202-P3_5p

mirBase accessionNone
Sequence
0- UUCCUAUGCAUAUACCUCUUU -21
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Star sequence

Xla-Mir-202-P3_3p* (predicted)

mirBase accessionNone
Sequence
36- AGAGGCAUAGGGCAUGGGAAAA -58
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