| MirGeneDB ID | Cpo-Mir-202 |
|---|
| Family name |
MIR-202 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-202
|
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| Paralogues |
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| Orthologues |
Aca-Mir-202
Ami-Mir-202
Bta-Mir-202
Cfa-Mir-202
Cja-Mir-202
Cli-Mir-202
Cmi-Mir-202
Cpi-Mir-202
Dno-Mir-202
Dre-Mir-202
Ebu-Mir-202
Eca-Mir-202
Ete-Mir-202
Gga-Mir-202
Gja-Mir-202
Gmo-Mir-202
Hsa-Mir-202
Laf-Mir-202
Lch-Mir-202
Loc-Mir-202
Mal-Mir-202
Mml-Mir-202
Mmr-Mir-202
Mmu-Mir-202
Mun-Mir-202
Neu-Mir-202
Oan-Mir-202
Ocu-Mir-202
Pab-Mir-202
Pbv-Mir-202
Pma-Mir-202-P5
Pma-Mir-202-P6
Rno-Mir-202
Sha-Mir-202
Spt-Mir-202
Sto-Mir-202
Tgu-Mir-202
Tni-Mir-202
Xla-Mir-202-P3
Xla-Mir-202-P4
Xtr-Mir-202-P1
Xtr-Mir-202-P2
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
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Genome context
(cavPor3) |
scaffold_1: 34864191-34864248 [+]
UCSC
|
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| Seed |
UCCUAUG |
|---|
Precursor
(pre-Mir +30nt flank) |
GCUCUCGGCAGAAUCGCUCGCUGUUCCUUUUUCCUAUGCAUAUACUUCUUUGAGGAUCUGGCCUAAAGAGGUAUAUGGCAUGGGAAAAUGGAGCAAUGAGGUCCUCCUCAUCAGCACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCUCUCGGCAGAAUCGC-- C U -| GAGGAU
UCG UGUUCC UUUUCCUAUG CAUAUACUUCUUU \
AGU ACGAGG AAAAGGGUAC GUAUAUGGAGAAA C
UCACGACUACUCCUCCUGG A U G^ UCCGGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Mature sequence |
Cpo-Mir-202_5p |
| mirBase accession | MIMAT0047095 |
|---|
| Sequence |
0- UUCCUAUGCAUAUACUUCUUU -21
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-202_3p* |
| mirBase accession | MIMAT0047096 |
|---|
| Sequence |
36- AGAGGUAUAUGGCAUGGGAAAA -58
Get sequence
|
|---|
