MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-202-P1

Family name MIR-202 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-202-1
Paralogues Xtr-Mir-202-P2 
Orthologues Aca-Mir-202  Ami-Mir-202  Bta-Mir-202  Cfa-Mir-202  Cja-Mir-202  Cli-Mir-202  Cmi-Mir-202  Cpi-Mir-202  Cpo-Mir-202  Dno-Mir-202  Dre-Mir-202  Ebu-Mir-202  Eca-Mir-202  Ete-Mir-202  Gga-Mir-202  Gja-Mir-202  Gmo-Mir-202  Hsa-Mir-202  Laf-Mir-202  Lch-Mir-202  Loc-Mir-202  Mal-Mir-202  Mml-Mir-202  Mmr-Mir-202  Mmu-Mir-202  Mun-Mir-202  Neu-Mir-202  Oan-Mir-202  Ocu-Mir-202  Pab-Mir-202  Pbv-Mir-202  Rno-Mir-202  Sha-Mir-202  Spt-Mir-202  Sto-Mir-202  Tgu-Mir-202  Tni-Mir-202 
Node of Origin (locus) X. tropicalis
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr7: 18578561-18578618 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-202-P1)		 Mir-202-P1 chr7: 18578561-18578618 [+] UCSC Ensembl
Mir-202-P2 chr7: 18586271-18586328 [+] UCSC Ensembl
Seed UCCUAUG
Precursor
(pre-Mir +30nt flank)		 
UGGUACGGUGCAUUUACUCGCUGUUCCUUUUUCCUAUGCAUAUACCUCUUUGAAAAAUAAAUGUAAAGGGGCAUAGGGCAUGGGAAAAUGGCGCAGCUGAGCCCCUCUGCAGUACUAA
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Structure
        10          20        30        40         50        
UGGUACGGUGCAUUUACUC--     U  U           A-|  A       GAAAAA 
                     GCUGU CC UUUUCCUAUGC  UAU CCUCUUU      \
                     CGACG GG AAAAGGGUACG  AUA GGGGAAA      U
AAUCAUGACGUCUCCCCGAGU     C  U           GG^  C       UGUAAA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-202-P1_5p
mirBase accessionMIMAT0003620
Sequence 
0- UUCCUAUGCAUAUACCUCUUU -21
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Proposed targets TargetScanVert: xtr-miR-202-5p
Star sequence

Xtr-Mir-202-P1_3p*
mirBase accessionMIMAT0003621
Sequence 
36- AGGGGCAUAGGGCAUGGGAAAA -58
Get sequence
Proposed targets TargetScanVert: xtr-miR-202-3p