MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-202

Family name MIR-202 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-202  Ami-Mir-202  Bta-Mir-202  Cfa-Mir-202  Cja-Mir-202  Cli-Mir-202  Cmi-Mir-202  Cpi-Mir-202  Cpo-Mir-202  Dno-Mir-202  Dre-Mir-202  Ebu-Mir-202  Eca-Mir-202  Ete-Mir-202  Gga-Mir-202  Gja-Mir-202  Gmo-Mir-202  Hsa-Mir-202  Laf-Mir-202  Lch-Mir-202  Mal-Mir-202  Mml-Mir-202  Mmr-Mir-202  Mmu-Mir-202  Mun-Mir-202  Neu-Mir-202  Oan-Mir-202  Ocu-Mir-202  Pab-Mir-202  Pbv-Mir-202  Pma-Mir-202-P5  Pma-Mir-202-P6  Rno-Mir-202  Sha-Mir-202  Spt-Mir-202  Sto-Mir-202  Tgu-Mir-202  Tni-Mir-202  Xla-Mir-202-P3  Xla-Mir-202-P4  Xtr-Mir-202-P1  Xtr-Mir-202-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG5: 11341875-11341932 [+] Ensembl
Seed UCCUAUG
Precursor
(pre-Mir +30nt flank)		 
GUCAGAAGGCACUGUGCUCGUUGUUCCUUUUUCCUAUGCAUAUACCUCUUUGAGACGUAGCUGUAAAGAGGUAUACGGCAUGGGAAAAUGGGGCUGCAGAGGUAAUCUACUUGAUCAC
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Structure
        10          20        30        40         50        
GUCAGAAGGCACUGUGCUC--  U     U           A-|          GAGACG 
                     GU GUUCC UUUUCCUAUGC  UAUACCUCUUU      \
                     CG CGGGG AAAAGGGUACG  AUAUGGAGAAA      U
CACUAGUUCAUCUAAUGGAGA  U     U           GC^          UGUCGA 
      110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-202_5p
mirBase accessionNone
Sequence 
0- UUCCUAUGCAUAUACCUCUUU -21
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Star sequence

Loc-Mir-202_3p*
mirBase accessionNone
Sequence 
36- AGAGGUAUACGGCAUGGGAAAA -58
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