MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-202-P6

Family name MIR-202 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-202-P5 
Orthologues Aca-Mir-202  Ami-Mir-202  Bta-Mir-202  Cfa-Mir-202  Cja-Mir-202  Cli-Mir-202  Cmi-Mir-202  Cpi-Mir-202  Cpo-Mir-202  Dno-Mir-202  Dre-Mir-202  Ebu-Mir-202  Eca-Mir-202  Ete-Mir-202  Gga-Mir-202  Gja-Mir-202  Gmo-Mir-202  Hsa-Mir-202  Laf-Mir-202  Lch-Mir-202  Loc-Mir-202  Mal-Mir-202  Mml-Mir-202  Mmr-Mir-202  Mmu-Mir-202  Mun-Mir-202  Neu-Mir-202  Oan-Mir-202  Ocu-Mir-202  Pab-Mir-202  Pbv-Mir-202  Rno-Mir-202  Sha-Mir-202  Spt-Mir-202  Sto-Mir-202  Tgu-Mir-202  Tni-Mir-202 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NW_022638231.1: 172894-172953 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-202-P6)		 Mir-202-P5 NW_022638231.1: 172480-172539 [+] UCSC Ensembl
Mir-202-P6 NW_022638231.1: 172894-172953 [+] UCSC Ensembl
Seed UCCUAUG
Precursor
(pre-Mir +30nt flank)		 
UGUCAUCAUCAUCAGCAGGGUUUCUUCCUCUUCCUAUGCACAAACCUCUUUGCGUGAACUCAGUCCGCAAAGAGGAGGGGCAUGGGAGAGGAUGGGAUCUCCUCCUCAUCAACAUCAUCA
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Structure
        10           20        30        40        50          
UGUCAUCAUCAUCAGCA---|   UU U      U       ACAAA         GUGAAC 
                    GGGU  C UCCUCU CCUAUGC     CCUCUUUGC      \
                    UCUA  G AGGAGA GGGUACG     GGAGAAACG      U
ACUACUACAACUACUCCUCC^   GG U      -       GGGA-         CCUGAC 
.       110       100        90         80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-202-P6_5p
mirBase accessionNone
Sequence 
0- UUCCUAUGCACAAACCUCUUUGC -23
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Star sequence

Pma-Mir-202-P6_3p* (predicted)
mirBase accessionNone
Sequence 
37- CAAAGAGGAGGGGCAUGGGAGAG -60
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