MirGeneDB ID | Dre-Mir-139 |
Family name |
MIR-139 (all species) |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-139
|
Paralogues |
|
Orthologues |
Aca-Mir-139
Ami-Mir-139
Bta-Mir-139
Cfa-Mir-139
Cja-Mir-139
Cli-Mir-139
Cmi-Mir-139
Cpi-Mir-139
Cpo-Mir-139
Dno-Mir-139
Eca-Mir-139
Ete-Mir-139
Gja-Mir-139
Gmo-Mir-139
Hsa-Mir-139
Laf-Mir-139
Lch-Mir-139
Loc-Mir-139
Mal-Mir-139
Mdo-Mir-139
Mml-Mir-139
Mmr-Mir-139
Mmu-Mir-139
Mun-Mir-139
Neu-Mir-139
Oan-Mir-139
Ocu-Mir-139
Pab-Mir-139
Pbv-Mir-139
Rno-Mir-139
Sha-Mir-139
Spt-Mir-139
Sto-Mir-139
Tgu-Mir-139
Tni-Mir-139
Xla-Mir-139-P1
Xla-Mir-139-P2
Xtr-Mir-139
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (danRer11) |
LKPD01049450.1: 531-590 [-]
UCSC
Ensembl
|
Seed |
CUACAGU |
Precursor (pre-Mir +30nt flank) |
CAGUUCGGCUGUAGUUUGGUCUGGCUGUAUUCUACAGUGCAUGUGUCUCCAGUGUUUCUAUGGCGACUGGGGAGGCAGCGCUGUUGGAAUAACAACCAGAACCGCUGAACACCAACCGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGUUCGGCUGUAGUUUGG- C - -| A G GUUUC
UCUGG UG UAUUCU ACAGUGC UGU UCUCCAGU U
AGACC AC AUAAGG UGUCGCG ACG AGGGGUCA A
CGGCCAACCACAAGUCGCCA A A U^ - G GCGGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Mature sequence |
Dre-Mir-139_5p |
mirBase accession | MIMAT0003349 |
Sequence |
0- UCUACAGUGCAUGUGUCUCCAGU -23
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-139
|
Star sequence |
Dre-Mir-139_3p* |
mirBase accession | MIMAT0032008 |
Sequence |
37- UGGGGAGGCAGCGCUGUUGGAAU -60
Get sequence
|