Mir-139

MirGeneDB ID

Ami-Mir-139

Family name

MIR-139 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-139

Paralogues

Orthologues

Aca-Mir-139 Bta-Mir-139 Cfa-Mir-139 Cja-Mir-139 Cli-Mir-139 Cmi-Mir-139 Cpi-Mir-139 Cpo-Mir-139 Dno-Mir-139 Dre-Mir-139 Eca-Mir-139 Ete-Mir-139 Gja-Mir-139 Gmo-Mir-139 Hsa-Mir-139 Laf-Mir-139 Lch-Mir-139 Loc-Mir-139 Mal-Mir-139 Mdo-Mir-139 Mml-Mir-139 Mmr-Mir-139 Mmu-Mir-139 Mun-Mir-139 Neu-Mir-139 Oan-Mir-139 Ocu-Mir-139 Pab-Mir-139 Pbv-Mir-139 Rno-Mir-139 Sha-Mir-139 Spt-Mir-139 Sto-Mir-139 Tgu-Mir-139 Tni-Mir-139 Xla-Mir-139-P1 Xla-Mir-139-P2 Xtr-Mir-139

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713116.1: 33815-33873 [+] UCSC

Seed

CUACAGU

Precursor
(pre-Mir +30nt flank)

CCGGCGCGGCGCCGACAGGCCUGGCUGUAUUCUACAGUGCAUGUGUCUCCAGUGUUUCUAAGCGACUGGAGAUACAGCCCUGUCGGAAUAACAGCCAGCGCCAAUGCCUUCAGCCCACG

Get precursor sequence

Structure

        10        20          30         40        50         
CCGGCGCGGCGCCGACAG  -       -      -|   U  A            GUUUC 
                  GC CUGGCUG UAUUCU ACAG GC UGUGUCUCCAGU     \
                  CG GACCGAC AUAAGG UGUC CG ACAUAGAGGUCA     U
GCACCCGACUUCCGUAAC  C       A      C^   C  -            GCGAA 
       110       100        90        80         70        60