MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-139

Family name MIR-139 (all species)
Seed CUACAGU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cli-Mir-139  Cmi-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Dre-Mir-139  Ete-Mir-139  Gja-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Loc-Mir-139  Mal-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmu-Mir-139  Mun-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Sto-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xla-Mir-139-P1  Xla-Mir-139-P2  Xtr-Mir-139 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(LatCha1_add)
JH127329.1: 94314-94372 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUUUGUACUCUGAAAGGCUUGGCUGUAUUCUACAGUGCAUGUGUCUCCAGUGGUUCUAGGCAGCUGGAGAUACAGCCCUGUUGGAAUAACAACUAAGACCAAUGUCUUCGCUUGGCU
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Structure
        10         20         30         40        50         
CUUUUUGUACUCUGAAAGG-     C  -      -|   U  A            GGUUC 
                    CUUGG UG UAUUCU ACAG GC UGUGUCUCCAGU     \
                    GAAUC AC AUAAGG UGUC CG ACAUAGAGGUCG     U
UCGGUUCGCUUCUGUAACCA     A  A      U^   C  -            ACGGA 
       110       100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Lch-Mir-139_5p (predicted)

mirBase accessionNone
Sequence
0- UCUACAGUGCAUGUGUCUCCAGU -23
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Star sequence

Lch-Mir-139_3p* (predicted)

mirBase accessionNone
Sequence
36- UGGAGAUACAGCCCUGUUGGAAU -59
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