| MirGeneDB ID | Spt-Mir-139 |
|---|---|
| Family name | MIR-139 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-139 Ami-Mir-139 Bta-Mir-139 Cfa-Mir-139 Cja-Mir-139 Cli-Mir-139 Cmi-Mir-139 Cpi-Mir-139 Cpo-Mir-139 Dno-Mir-139 Dre-Mir-139 Eca-Mir-139 Ete-Mir-139 Gja-Mir-139 Gmo-Mir-139 Hsa-Mir-139 Laf-Mir-139 Lch-Mir-139 Loc-Mir-139 Mal-Mir-139 Mdo-Mir-139 Mml-Mir-139 Mmr-Mir-139 Mmu-Mir-139 Mun-Mir-139 Neu-Mir-139 Oan-Mir-139 Ocu-Mir-139 Pab-Mir-139 Pbv-Mir-139 Rno-Mir-139 Sha-Mir-139 Sto-Mir-139 Tgu-Mir-139 Tni-Mir-139 Xla-Mir-139-P1 Xla-Mir-139-P2 Xtr-Mir-139 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Gnathostomata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01001076.1: 1155763-1155821 [-] UCSC Ensembl |
| Seed | CUACAGU |
| Precursor (pre-Mir +30nt flank) |
ACACGCCGGCGGGGAACGGCCUGGCUGUAUUCUACAGUGCAUGUGUCUCCAGUGUUACUAAGCAACUGGAGAUACAGCCCUGUCGGAAUAACAGCCAGAGCUAAUAUCAUCAUCUACCUGet precursor sequence |
| Structure | 10 20 30 40 50 ACACGCCGGCGGGGAACG - - -| U A GUUAC GC CUGGCUG UAUUCU ACAG GC UGUGUCUCCAGU \ CG GACCGAC AUAAGG UGUC CG ACAUAGAGGUCA U UCCAUCUACUACUAUAAU A A C^ C - ACGAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Spt-Mir-139_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UCUACAGUGCAUGUGUCUCCAGU -23
Get sequence
|
| Star sequence | Spt-Mir-139_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- UGGAGAUACAGCCCUGUCGGAAU -59
Get sequence
|
