MirGeneDB 2.1
MirGeneDB ID

Sto-Mir-139

Family name MIR-139 (all species)
Seed CUACAGU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cli-Mir-139  Cmi-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Dre-Mir-139  Ete-Mir-139  Gja-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Lch-Mir-139  Loc-Mir-139  Mal-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmu-Mir-139  Mun-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xla-Mir-139-P1  Xla-Mir-139-P2  Xtr-Mir-139 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_003427355_STO_add)		 BFAA01014933.1: 12442-12501 [+]
Precursor
(pre-Mir +30nt flank)
GUGGAAGAUCUCUGAGUGGCUUGGCUGUAUUCUACAGUGCAUGUGUCUCCAGUGUUACACAGGCAACUGGGGAUGCAGCUCUGUUGGAAUAACAGCCAAGACCAAUAACGACAGCCAGUC
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Structure
        10         20         30         40        50         
GUGGAAGAUCUCUGAGUGG-        -      -|   U  A            GUUAC 
                    CUUGGCUG UAUUCU ACAG GC UGUGUCUCCAGU     A
                    GAACCGAC AUAAGG UGUC CG ACGUAGGGGUCA     C
CUGACCGACAGCAAUAACCA        A      U^   U  -            ACGGA 
.       110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Sto-Mir-139_5p
mirBase accessionNone
Sequence 
0- UCUACAGUGCAUGUGUCUCCAGU -23
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Star sequence

Sto-Mir-139_3p* (predicted)
mirBase accessionNone
Sequence 
37- UGGGGAUGCAGCUCUGUUGGAAU -60
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