| MirGeneDB ID | Xla-Mir-139-P1 |
|---|---|
| Family name | MIR-139 (all species) |
| Seed | CUACAGU |
| Species | African clawed frog (Xenopus laevis) |
| MiRBase ID | |
| Paralogues | Xla-Mir-139-P2 |
| Orthologues | Aca-Mir-139 Ami-Mir-139 Bta-Mir-139 Cfa-Mir-139 Cli-Mir-139 Cmi-Mir-139 Cpi-Mir-139 Cpo-Mir-139 Dno-Mir-139 Dre-Mir-139 Ete-Mir-139 Gja-Mir-139 Gmo-Mir-139 Hsa-Mir-139 Lch-Mir-139 Loc-Mir-139 Mal-Mir-139 Mdo-Mir-139 Mml-Mir-139 Mmu-Mir-139 Mun-Mir-139 Oan-Mir-139 Ocu-Mir-139 Pbv-Mir-139 Rno-Mir-139 Sha-Mir-139 Spt-Mir-139 Sto-Mir-139 Tgu-Mir-139 Tni-Mir-139 Xtr-Mir-139 |
| Node of Origin (locus) | X. laevis |
| Node of Origin (family) | Gnathostomata |
| Genome context (GCF_001663975.1_XLA_v2) |
NW_016786261.1: 15-75 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCUACAGUGCAUGUGUCUCCAGUCGUAUAUAGAGGAACUGGGGAUACAGCUCUGUUGGAAUGet precursor sequence |
| Structure | 10 20 -- -| U A - GUAU UCU ACAG GC UGUGUCUCCAGU C A AGG UGUC CG ACAUAGGGGUCA G U UA U^ U - A GAGA 60 50 40 30 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Xla-Mir-139-P1_5p |
| mirBase accession | None |
| Sequence |
0- UCUACAGUGCAUGUGUCUCCAGU -23
Get sequence
|
| Star sequence | Xla-Mir-139-P1_3p* |
| mirBase accession | None |
| Sequence |
38- UGGGGAUACAGCUCUGUUGGAAU -61
Get sequence
|
