MirGeneDB 3.0
MirGeneDB ID

Dan-Mir-2-P3a

Family name MIR-2 (all species)
Species Fruit fly (Drosophila ananassae)
MiRBase ID
Paralogues Dan-Mir-2-P1-v1  Dan-Mir-2-P2a  Dan-Mir-2-P2b1  Dan-Mir-2-P2b2  Dan-Mir-2-P3a-v1  Dan-Mir-2-P3b  Dan-Mir-2-P4a-v1  Dan-Mir-2-P4b-v1  Dan-Mir-2-P5  Dan-Mir-2-P6a  Dan-Mir-2-P6b  Dan-Mir-2-P6c  Dan-Mir-2-P7  Dan-Mir-2-P8  Dan-Mir-2-P9 
Orthologues Aae-Mir-2-P3  Aga-Mir-2-P3  Bge-Mir-2-P3-v1  Cbr-Mir-2-o3  Cel-Mir-2-o3  Dlo-Mir-2-P3-v1  Dma-Mir-2-P3  Dme-Mir-2-P3a  Dpu-Mir-2-P3  Dsi-Mir-2-P3a  Dya-Mir-2-P3a  Gpa-Mir-2-P3a  Gsp-Mir-2  Hme-Mir-2-P3-v1  Isc-Mir-2-P3  Ple-Mir-2  Tca-Mir-2-P3-v1 
Node of Origin (locus) Glossinidae + Drosophilidae
Node of Origin (family) Protostomia
Genome context
(Dana_caf1)		 scaffold_12916: 6006068-6006130 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P3a-v2)		 Mir-2-P3a-v1 scaffold_12916: 6006068-6006130 [+] Ensembl
Mir-2-P3a-v2 scaffold_12916: 6006068-6006130 [+] Ensembl
Variant

Dan-Mir-2-P3a-v2
Seed CACAGCU
Precursor
(pre-Mir +30nt flank)		 
GGAUACAGAUUUUUUUAGGGAACUGCGACCCUCCUUAAAGUGGCGGUGACAUGUAGCUUUCAUAUUCAUAUCACAGCUUUGCUUUCAGGAGCGUUGAGGUUUCUCGAAGCCAUCAAUAGUGAA
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Structure
        10          20        30        40          50          
GGAUACAGAUUUUUUUA--       G    C     U     --|  G    CAUGUAGCUU 
                   GGGAACU CGAC CUCCU AAAGU  GGC GUGA          \
                   UCUUUGG GUUG GAGGA UUUCG  UCG CACU          U
AAGUGAUAACUACCGAAGC       A    C     C     UU^  A    AUACUUAUAC 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Fe
Star sequence

Dan-Mir-2-P3a-v2_5p*
mirBase accessionNone
Sequence 
0- CUCCUUAAAGUGGCGGUGACA -21
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Mature sequence

Dan-Mir-2-P3a-v2_3p
mirBase accessionNone
Sequence 
40- UCACAGCUUUGCUUUCAGGAGCG -63
Get sequence
Variant

Dan-Mir-2-P3a-v1
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
GGAUACAGAUUUUUUUAGGGAACUGCGACCCUCCUUAAAGUGGCGGUGACAUGUAGCUUUCAUAUUCAUAUCACAGCUUUGCUUUCAGGAGCGUUGAGGUUUCUCGAAGCCAUCAAUAGUGAA
Get precursor sequence
Structure
        10          20        30        40          50          
GGAUACAGAUUUUUUUA--       G    C     U     --|  G    C   UAGCUU 
                   GGGAACU CGAC CUCCU AAAGU  GGC GUGA AUG      \
                   UCUUUGG GUUG GAGGA UUUCG  UCG CACU UAC      U
AAGUGAUAACUACCGAAGC       A    C     C     UU^  A    A   UUAUAC 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe
Star sequence

Dan-Mir-2-P3a-v1_5p*
mirBase accessionNone
Sequence 
0- CUCCUUAAAGUGGCGGUGACAUG -23
Get sequence
Mature sequence

Dan-Mir-2-P3a-v1_3p
mirBase accessionNone
Sequence 
38- UAUCACAGCUUUGCUUUCAGGAGCG -63
Get sequence