MirGeneDB 2.1
MirGeneDB ID

Cli-Mir-489-v2

Family name MIR-489 (all species)
Seed GACAUCA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-489
Paralogues Cli-Mir-489-v1 
Orthologues Aca-Mir-489-v2  Ami-Mir-489-v2  Bta-Mir-489-v2  Cfa-Mir-489  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v2  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v2  Hsa-Mir-489-v2  Lch-Mir-489  Loc-Mir-489-v2  Mal-Mir-489-v2  Mml-Mir-489-v2  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v2  Tni-Mir-489-v2  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(colLiv2)		 scaffold169: 1811716-1811777 [+]
Clustered miRNAs
(< 50kb from Mir-489-v2)		 Mir-489-v2 scaffold169: 1811716-1811777 [+]
Mir-489-v1 scaffold169: 1811717-1811776 [+]
Precursor
(pre-Mir +30nt flank)
GUAACAGUCAUUUGUCACGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGGACUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGGGACAUCACUUAAACAG
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Structure
        10          20        30        40        50        60
GUAACAGUCAUUUGUCAC--|UG UG C    UG             C      UACUUGG 
                    G  G  G UUGG  GUCGUAUGUAUGA GUCAUU       A
                    C  C  C AAUC  CGGCAUGUAUACU CAGUGA       C
GACAAAUUCACUACAGGGUA^GU GU A    GU             A      GGAUUUU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-489-v2_5p*
mirBase accessionMIMAT0038656
Sequence 
0- UGGUCGUAUGUAUGACGUCAUU -22
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Mature sequence

Cli-Mir-489-v2_3p
mirBase accessionMIMAT0038657
Sequence 
40- UGACAUCAUAUGUACGGCUGCU -62
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