MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-144

Family name MIR-144 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-144
Paralogues Cfa-Mir-144-v1 
Orthologues Ami-Mir-144  Cmi-Mir-144  Cpi-Mir-144  Dno-Mir-144  Ete-Mir-144  Gga-Mir-144  Laf-Mir-144  Lch-Mir-144  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Oan-Mir-144  Pbv-Mir-144  Pma-Mir-144  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr9: 43031036-43031093 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v2)		 Mir-451 chr9: 43030875-43030916 [-] UCSC Ensembl
Mir-144-v1 chr9: 43031036-43031093 [-] UCSC Ensembl
Mir-144-v2 chr9: 43031036-43031093 [-] UCSC Ensembl
Variant

Cfa-Mir-144-v2
Seed GAUAUCA
Precursor
(pre-Mir +30nt flank)		 
CUCCCUGUGCCUGCUGCGGGGCCCUGGCUAGGAUAUCAUCAUAUACUGUAAGUUUGCGACAAGAUACUACAGUAUAGAUGAUGUACUAGUCCGGGUCCCCACAGCUCUGGAGCCAGAU
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Structure
        10          20        30        40        50         
CUCCCUGUGCCUGCUGC--|      U      G        A         A  UUGCG 
                   GGGGCCC GGCUAG AUAUCAUC UAUACUGUA GU     A
                   CCCUGGG CUGAUC UGUAGUAG AUAUGACAU CA     C
UAGACCGAGGUCUCGACAC^      C      A        -         -  UAGAA 
      110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-144-v2_5p
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Star sequence

Cfa-Mir-144-v2_3p*
mirBase accessionMIMAT0006734
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
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Proposed targets TargetScanVert: cfa-miR-144
miRDB: MIMAT0006734
Variant

Cfa-Mir-144-v1
Seed ACAGUAU
Precursor
(pre-Mir +30nt flank)		 
CUCCCUGUGCCUGCUGCGGGGCCCUGGCUAGGAUAUCAUCAUAUACUGUAAGUUUGCGACAAGAUACUACAGUAUAGAUGAUGUACUAGUCCGGGUCCCCACAGCUCUGGAGCCAGAU
Get precursor sequence
Structure
        10          20        30        40        50         
CUCCCUGUGCCUGCUGC--|      U      G        A         AGUUUGCG 
                   GGGGCCC GGCUAG AUAUCAUC UAUACUGUA        \
                   CCCUGGG CUGAUC UGUAGUAG AUAUGACAU        A
UAGACCGAGGUCUCGACAC^      C      A        -         CAUAGAAC 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-144-v1_5p*
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAG -22
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Mature sequence

Cfa-Mir-144-v1_3p
mirBase accessionMIMAT0006734
Sequence 
37- UACAGUAUAGAUGAUGUACUA -58
Get sequence
Proposed targets TargetScanVert: cfa-miR-144
miRDB: MIMAT0006734