MirGeneDB 2.1

MirGeneDB ID

Aca-Mir-199-P3-v2

Family name MIR-199 (all species)
Seed ACAGUAG
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-199a-1
Paralogues Aca-Mir-199-P1-v1  Aca-Mir-199-P1-v2  Aca-Mir-199-P1-v3  Aca-Mir-199-P2-v1  Aca-Mir-199-P2-v2  Aca-Mir-199-P2-v3  Aca-Mir-199-P3-v1  Aca-Mir-199-P3-v3 
Orthologues Ami-Mir-199-P3-v1  Ami-Mir-199-P3-v2  Ami-Mir-199-P3-v3  Bta-Mir-199-P3-v1  Bta-Mir-199-P3-v2  Bta-Mir-199-P3-v3  Cfa-Mir-199-P3-v1  Cfa-Mir-199-P3-v2  Cfa-Mir-199-P3-v3  Cpi-Mir-199-P3-v1  Cpi-Mir-199-P3-v2  Cpi-Mir-199-P3-v3  Cpo-Mir-199-P3-v1  Cpo-Mir-199-P3-v2  Cpo-Mir-199-P3-v3  Dre-Mir-199-P3-v1  Dre-Mir-199-P3-v2  Dre-Mir-199-P3-v3  Ete-Mir-199-P3-v1  Ete-Mir-199-P3-v2  Ete-Mir-199-P3-v3  Gja-Mir-199-P3-v1  Gja-Mir-199-P3-v2  Gja-Mir-199-P3-v3  Gmo-Mir-199-P3-v1  Gmo-Mir-199-P3-v2  Gmo-Mir-199-P3-v3  Hsa-Mir-199-P3-v1  Hsa-Mir-199-P3-v2  Hsa-Mir-199-P3-v3  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Loc-Mir-199-P3-v2  Mal-Mir-199-P3-v1  Mal-Mir-199-P3-v2  Mal-Mir-199-P3-v3  Mdo-Mir-199-P3-v1  Mdo-Mir-199-P3-v2  Mdo-Mir-199-P3-v3  Mml-Mir-199-P3-v1  Mml-Mir-199-P3-v2  Mml-Mir-199-P3-v3  Mmu-Mir-199-P3-v1  Mmu-Mir-199-P3-v2  Mmu-Mir-199-P3-v3  Mun-Mir-199-P3-v1  Mun-Mir-199-P3-v2  Mun-Mir-199-P3-v3  Ocu-Mir-199-P3-v1  Ocu-Mir-199-P3-v2  Ocu-Mir-199-P3-v3  Pbv-Mir-199-P3-v1  Pbv-Mir-199-P3-v2  Pbv-Mir-199-P3-v3  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Sha-Mir-199-P3-v2  Sha-Mir-199-P3-v3  Tni-Mir-199-P3-v1  Tni-Mir-199-P3-v2  Tni-Mir-199-P3-v3  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)
2: 80766239-80766301 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P3-v2)
Mir-199-P3-v1 2: 80766239-80766301 [-] UCSC Ensembl
Mir-199-P3-v2 2: 80766239-80766301 [-] UCSC Ensembl
Mir-199-P3-v3 2: 80766239-80766301 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGGCAUCUUCAGGAGACCAGCCCCGCCUUCCCAGUGUUCAGACUACCUGUUCAGGAAGCUACAAAGGUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCUUGGGUGAGCAACGUUUCUAGG
Get precursor sequence
Structure
        10          20        30        40        50        60 
AAGGCAUCUUCAGGAGA-  -|    CGC  UC       U        C   U  GGAAGC 
                  CC AGCCC   CU  CCAGUGU CAGACUAC UGU CA      U
                  GG UCGGG   GA  GGUUACA GUCUGAUG ACA GU      A
GGAUCUUUGCAACGAGUG  U^    UCA  UU       C        -   U  GGAAAC 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Star sequence

Aca-Mir-199-P3-v2_5p*

mirBase accessionMIMAT0021834
Sequence
0- CCCAGUGUUCAGACUACCUGUUCA -24
Get sequence
Mature sequence

Aca-Mir-199-P3-v2_3p

mirBase accessionNone
Sequence
40- UACAGUAGUCUGCACAUUGGUUA -63
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