Mir-451-P2

MirGeneDB ID

Xla-Mir-451-P2

Family name

MIR-451 (all species)

Seed

AACCGUU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-451-P1

Orthologues

Aca-Mir-451 Ami-Mir-451 Bta-Mir-451 Cfa-Mir-451 Cli-Mir-451 Cmi-Mir-451 Cpi-Mir-451 Cpo-Mir-451 Dno-Mir-451 Dre-Mir-451 Ebu-Mir-451 Ete-Mir-451 Gga-Mir-451 Gja-Mir-451 Gmo-Mir-451 Hsa-Mir-451 Lch-Mir-451 Loc-Mir-451 Mal-Mir-451 Mdo-Mir-451 Mml-Mir-451 Mmu-Mir-451 Mun-Mir-451 Oan-Mir-451 Ocu-Mir-451 Pma-Mir-451 Rno-Mir-451 Sha-Mir-451 Spt-Mir-451 Sto-Mir-451 Tgu-Mir-451 Tni-Mir-451 Xtr-Mir-451

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 4343476-4343517 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-451-P2)

Mir-144-P2-v1 NC_030727.1: 4344085-4344142 [-] UCSC Ensembl
Mir-144-P2-v2 NC_030727.1: 4344085-4344142 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUGGGUGGAGACCUGUAGGGUGUCAAUGAAACCGUUACCAUUACUGAGUUUAGUAAUGGUAAGGGUUCUGUUGCUGCUCUUCCAUUCGCUUUUGAGAUUC

Get precursor sequence

Structure

        10          20        30        40        50
UGUUGGGUGGAGACCUGU--|     U    GA    G            A 
                    AGGGUG CAAU  AACC UUACCAUUACUG G
                    UCUCGU GUUG  UUGG AAUGGUAAUGAU U
CUUAGAGUUUUCGCUUACCU^     C    UC    G            U 
100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

As a non-canonical (Group 4, Kim et al. 2016) miRNA there is no discrete 3p read and the 3' end of the mature miRNA is somewhat arbitrary.

3' NTU

Motifs

Tissue expression

Eg	He	Re	St	St	St	St

Mature sequence

Xla-Mir-451-P2_5p

mirBase accession

None

Sequence

0- AAACCGUUACCAUUACUGAGUU -22

Get sequence