Mir-451

MirGeneDB ID

Xtr-Mir-451

Family name

MIR-451 (all species)

Seed

AACCGUU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-451

Paralogues

Orthologues

Aca-Mir-451 Ami-Mir-451 Bta-Mir-451 Cfa-Mir-451 Cli-Mir-451 Cmi-Mir-451 Cpi-Mir-451 Cpo-Mir-451 Dno-Mir-451 Dre-Mir-451 Ebu-Mir-451 Ete-Mir-451 Gga-Mir-451 Gja-Mir-451 Gmo-Mir-451 Hsa-Mir-451 Lch-Mir-451 Loc-Mir-451 Mal-Mir-451 Mdo-Mir-451 Mml-Mir-451 Mmu-Mir-451 Mun-Mir-451 Oan-Mir-451 Ocu-Mir-451 Pma-Mir-451 Rno-Mir-451 Sha-Mir-451 Spt-Mir-451 Sto-Mir-451 Tgu-Mir-451 Tni-Mir-451 Xla-Mir-451-P1 Xla-Mir-451-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr2: 26507261-26507302 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-451)

Mir-144 chr2: 26506546-26506603 [+] UCSC Ensembl
Mir-451 chr2: 26507261-26507302 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUUGGCAGGAUACCUGUAGAGUGGCAAUGAAACCGUUACCAUUACUGAGUUUAGUAAUGGUAAGGGUUCUGUUGCUGCUCUUCCAUUCGCCAUUGAGAUUC

Get precursor sequence

Structure

        10          20        30        40        50
CUUUGGCAGGAUACCUGU--|   UG     GA    G            A 
                    AGAG  GCAAU  AACC UUACCAUUACUG G
                    UCUC  CGUUG  UUGG AAUGGUAAUGAU U
CUUAGAGUUACCGCUUACCU^   GU     UC    G            U 
100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

As a non-canonical (Group 4, Kim et al. 2016) miRNA there is no discrete 3p read and the 3' end of the mature miRNA is somewhat arbitrary.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Em	Em	Em	Em	He

Mature sequence

Xtr-Mir-451_5p

mirBase accession

MIMAT0003705

Sequence

0- AAACCGUUACCAUUACUGAGUU -22

Get sequence

Proposed targets

TargetScanVert: xtr-miR-451