MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-451

Family name MIR-451 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-451  Bta-Mir-451  Cfa-Mir-451  Cja-Mir-451  Cli-Mir-451  Cmi-Mir-451  Cpi-Mir-451  Cpo-Mir-451  Dno-Mir-451  Dre-Mir-451  Ebu-Mir-451  Eca-Mir-451  Ete-Mir-451  Gga-Mir-451  Gja-Mir-451  Gmo-Mir-451  Hsa-Mir-451  Laf-Mir-451  Lch-Mir-451  Loc-Mir-451  Mal-Mir-451  Mdo-Mir-451  Mml-Mir-451  Mmr-Mir-451  Mmu-Mir-451  Mun-Mir-451  Neu-Mir-451  Oan-Mir-451  Ocu-Mir-451  Pab-Mir-451  Pma-Mir-451  Rno-Mir-451  Sha-Mir-451  Spt-Mir-451  Sto-Mir-451  Tgu-Mir-451  Tni-Mir-451  Xla-Mir-451-P1  Xla-Mir-451-P2  Xtr-Mir-451 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711222.1: 62629-62670 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-451)		 Mir-451 NW_017711222.1: 62629-62670 [-] UCSC
Mir-144 NW_017711222.1: 62858-62915 [-] UCSC
Seed AACCGUU
Precursor
(pre-Mir +30nt flank)		 
ACACCAAGCGACAAGCCCGGGGCGUCGGGGAAACCGUUACCAUUACUGAGUUUAGUAAUGGUGACGGUUCUACCGCCGCCUCGCCUGCCCCGGACCAGGAGG
Get precursor sequence
Structure
        10          20         30        40        50
ACACCAAGCGACAAGCC--       U   -|   A               A 
                   CGGGGCG CGG GGAA CCGUUACCAUUACUG G
                   GCUCCGC GCC UCUU GGCAGUGGUAAUGAU U
GGAGGACCAGGCCCCGUCC       C   A^   -               U 
100        90        80        70         60
Deep sequencing
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CommentAs a non-canonical (Group 4, Kim et al. 2016) miRNA there is no discrete 3p read and the 3' end of the mature miRNA is somewhat arbitrary.
3' NTU NA
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ami-Mir-451_5p
mirBase accessionNone
Sequence 
0- AAACCGUUACCAUUACUGAGUU -22
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