| MirGeneDB ID | Lch-Mir-451 |
|---|---|
| Family name | MIR-451 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-451 Ami-Mir-451 Bta-Mir-451 Cfa-Mir-451 Cja-Mir-451 Cli-Mir-451 Cmi-Mir-451 Cpi-Mir-451 Cpo-Mir-451 Dno-Mir-451 Dre-Mir-451 Ebu-Mir-451 Eca-Mir-451 Ete-Mir-451 Gga-Mir-451 Gja-Mir-451 Gmo-Mir-451 Hsa-Mir-451 Laf-Mir-451 Loc-Mir-451 Mal-Mir-451 Mdo-Mir-451 Mml-Mir-451 Mmr-Mir-451 Mmu-Mir-451 Mun-Mir-451 Neu-Mir-451 Oan-Mir-451 Ocu-Mir-451 Pab-Mir-451 Pma-Mir-451 Rno-Mir-451 Sha-Mir-451 Spt-Mir-451 Sto-Mir-451 Tgu-Mir-451 Tni-Mir-451 Xla-Mir-451-P1 Xla-Mir-451-P2 Xtr-Mir-451 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127350.1: 727059-727100 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-451) |
Mir-451
JH127350.1: 727059-727100 [-]
Ensembl
Mir-144 JH127350.1: 728206-728264 [-] Ensembl |
| Seed | AACCGUU |
| Precursor (pre-Mir +30nt flank) |
CGCAAAGAACAUUUUGGGGAAGUGCCAAUCAAACCGUUACCAUUACUGAAUUUAGUAAUGGUAAGGGUUCUGUUGCUAUUCCCACUGCCGUCUUGAGUGCUAGet precursor sequence |
| Structure | 10 20 30 40 50 CGCAAAGAACAUUUUGG--| A C CA G A GG AGUG CAAU AACC UUACCAUUACUG A CC UUAU GUUG UUGG AAUGGUAAUGAU U AUCGUGAGUUCUGCCGUCA^ C C UC G U 100 90 80 70 60 |
| Deep sequencing | |
| Comment | As a non-canonical (Group 4, Kim et al. 2016) miRNA there is no discrete 3p read and the 3' end of the mature miRNA is somewhat arbitrary. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-451_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AAACCGUUACCAUUACUGAAUU -22
Get sequence
|
