Mir-451

MirGeneDB ID

Gja-Mir-451

Family name

MIR-451 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-451 Ami-Mir-451 Bta-Mir-451 Cfa-Mir-451 Cja-Mir-451 Cli-Mir-451 Cmi-Mir-451 Cpi-Mir-451 Cpo-Mir-451 Dno-Mir-451 Dre-Mir-451 Ebu-Mir-451 Eca-Mir-451 Ete-Mir-451 Gga-Mir-451 Gmo-Mir-451 Hsa-Mir-451 Laf-Mir-451 Lch-Mir-451 Loc-Mir-451 Mal-Mir-451 Mdo-Mir-451 Mml-Mir-451 Mmr-Mir-451 Mmu-Mir-451 Mun-Mir-451 Neu-Mir-451 Oan-Mir-451 Ocu-Mir-451 Pab-Mir-451 Pma-Mir-451 Rno-Mir-451 Sha-Mir-451 Spt-Mir-451 Sto-Mir-451 Tgu-Mir-451 Tni-Mir-451 Xla-Mir-451-P1 Xla-Mir-451-P2 Xtr-Mir-451

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015173122.1: 2276154-2276195 [-]

Clustered miRNAs
(< 50kb from Mir-451)

Mir-451 NW_015173122.1: 2276154-2276195 [-]
Mir-144-v1 NW_015173122.1: 2276609-2276665 [-]
Mir-144-v2 NW_015173122.1: 2276609-2276665 [-]

Seed

AACCGUU

Precursor
(pre-Mir +30nt flank)

CUGCAAGACAAACCUUGUGGUGUGGUGGGGAAACCGUUACCAUUACUGAAUUUAGUAAUGGUAAUGGUUAUUCUGCCACCCCAGCCAGCAUCUGAAAGACAG

Get precursor sequence

Structure

        10          20        30        40        50
CUGCAAGACAAACCUUG--|  U    UG   A                GA 
                   UGG GUGG  GGG AACCGUUACCAUUACU  A
                   ACC CACC  CUU UUGGUAAUGGUAAUGA  U
GACAGAAAGUCUACGACCG^  C    GU   A                UU 
100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

As a non-canonical (Group 4, Kim et al. 2016) miRNA there is no discrete 3p read and the 3' end of the mature miRNA is somewhat arbitrary.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gja-Mir-451_5p

mirBase accession

None

Sequence

0- AAACCGUUACCAUUACUGAAUUU -23

Get sequence