MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-196-P4d-v2

Family name MIR-196 (all species)
Seed GGUAGUU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xla-Mir-196-P4c-v1  Xla-Mir-196-P4c-v2  Xla-Mir-196-P4d-v1 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Hsa-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mml-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Xtr-Mir-196-P4 
Node of Origin (locus) X. laevis
Node of Origin (family) Olfactores
Genome context
(GCF_001663975.1_XLA_v2)
NC_030727.1: 128789653-128789712 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAUCUUUGUAUCCAGCUGAUCUGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUGCUAAUUUCUUAACGCGGCAACAAGAAACUGCCUUAAUUACGUCAGUUCGUCUUCAUCAAGUGCAA
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Structure
        10            20        30        40        50         
GCAUCUUUGUAUCCAGC----|   CU      U          A        GGAUUGCUA 
                     UGAU  GUGGUU AGGUAGUUUC UGUUGUUG         A
                     ACUG  CAUUAA UCCGUCAAAG ACAACGGC         U
AACGUGAACUACUUCUGCUUG^   --      U          A        GCAAUUCUU 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-196-P4d-v2_5p

mirBase accessionNone
Sequence
0- AGGUAGUUUCAUGUUGUUGGGA -22
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Star sequence

Xla-Mir-196-P4d-v2_3p* (predicted)

mirBase accessionNone
Sequence
38- GCGGCAACAAGAAACUGCCUUA -60
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