MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-144-P1-v2

Family name MIR-144 (all species)
Seed ACAGUAU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-144-P1-v1  Xla-Mir-144-P2-v1  Xla-Mir-144-P2-v2 
Orthologues Ami-Mir-144  Cmi-Mir-144  Cpi-Mir-144  Dno-Mir-144  Ete-Mir-144  Gga-Mir-144  Lch-Mir-144  Mdo-Mir-144  Mml-Mir-144  Oan-Mir-144  Pbv-Mir-144  Pma-Mir-144  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030726.1: 32856364-32856421 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUACUUGAGGCCUUUGGGACUGAGUUUGGGAUAUCAUCAUAUACUGUAAGUUUGUUUUAAGACACUACAGUAUAGAUGAUGUACUACACCAAGUCUCUCAAGCACCCGCCGUCGCU
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Structure
        10          20        30        40        50         
CUGUACUUGAGGCCUUU--|     GA  U   G        A         AGUUUGUU 
                   GGGACU  GU UGG AUAUCAUC UAUACUGUA        \
                   CUCUGA  CA AUC UGUAGUAG AUAUGACAU        U
UCGCUGCCGCCCACGAACU^     AC  C   A        -         CACAGAAU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-144-P1-v2_5p*

mirBase accessionNone
Sequence
0- GGAUAUCAUCAUAUACUGUAAG -22
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Mature sequence

Xla-Mir-144-P1-v2_3p

mirBase accessionNone
Sequence
37- UACAGUAUAGAUGAUGUACUA -58
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