MirGeneDB 3.0

MirGeneDB ID

Tur-Mir-210-P22

Family name MIR-210 (all species)
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID
Paralogues Tur-Mir-210-P21 
Orthologues Aca-Mir-210  Agr-Mir-210  Ami-Mir-210  Bfl-Mir-210  Bla-Mir-210  Bta-Mir-210  Cfa-Mir-210  Cja-Mir-210  Cli-Mir-210  Cmi-Mir-210  Cpi-Mir-210  Cpo-Mir-210  Dgr-Mir-210  Dma-Mir-210  Dno-Mir-210  Dpu-Mir-210  Dre-Mir-210  Eba-Mir-210  Ebu-Mir-210  Eca-Mir-210  Egr-Mir-210  Ete-Mir-210  Gga-Mir-210  Gja-Mir-210  Gmo-Mir-210  Hsa-Mir-210  Isc-Mir-210  Lan-Mir-210  Lch-Mir-210  Lgi-Mir-210  Lhy-Mir-210  Llo-Mir-210  Loc-Mir-210  Mal-Mir-210  Mdo-Mir-210  Mgi-Mir-210  Mml-Mir-210  Mmr-Mir-210  Mmu-Mir-210  Mom-Mir-210  Mun-Mir-210  Neu-Mir-210  Npo-Mir-210  Oan-Mir-210  Ocu-Mir-210  Ofu-Mir-210  Pab-Mir-210  Pau-Mir-210  Pbv-Mir-210  Pca-Mir-210  Pma-Mir-210  Rno-Mir-210  Sha-Mir-210  Sko-Mir-210  Sma-Mir-210  Snu-Mir-210  Spt-Mir-210  Tgu-Mir-210  Tni-Mir-210  War-Mir-210  Xla-Mir-210-P22  Xtr-Mir-210 
Node of Origin (locus) T. urticae
Node of Origin (family) Bilateria
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)
HE587323.1: 74280-74348 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-210-P22)
Mir-210-P21 HE587323.1: 68257-68325 [+] Ensembl
Mir-210-P22 HE587323.1: 74280-74348 [-] Ensembl
Seed UGUGCGU
Precursor
(pre-Mir +30nt flank)
GAAUUGAGCAAAUUAUUGAAAUGAUCUGUUAGUUGUUUGACCACGACACAAGGUUGCAUUUAAAAUCUUUUUAUCUUUGUGCGUGUUUCAAGCGGCUGUUGGUUCAUUUUAACCAUCAACAUUGCCUUC
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Structure
        10          20        30        40         50        60    
GAAUUGAGCAAAUUAUU--       U  GU           C-|   A       UUGCAUUUAA 
                   GAAAUGA CU  UAGUUGUUUGA  CACG CACAAGG          \
                   UUUUACU GG  GUCGGCGAACU  GUGC GUGUUUC          A
CUUCCGUUACAACUACCAA       U  UU           UU^   -       UAUUUUUCUA 
       120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Tur-Mir-210-P22_5p*

mirBase accessionNone
Sequence
0- AGUUGUUUGACCACGACACAAGG -23
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Mature sequence

Tur-Mir-210-P22_3p

mirBase accessionNone
Sequence
46- UUGUGCGUGUUUCAAGCGGCUGU -69
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