Mir-210-P22

MirGeneDB ID

Xla-Mir-210-P22

Family name

MIR-210 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-210-P21

Orthologues

Aca-Mir-210 Agr-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cja-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Dgr-Mir-210 Dma-Mir-210 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Eba-Mir-210 Ebu-Mir-210 Eca-Mir-210 Egr-Mir-210 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Lhy-Mir-210 Llo-Mir-210 Loc-Mir-210 Mal-Mir-210 Mdo-Mir-210 Mgi-Mir-210 Mml-Mir-210 Mmr-Mir-210 Mmu-Mir-210 Mom-Mir-210 Mun-Mir-210 Neu-Mir-210 Npo-Mir-210 Oan-Mir-210 Ocu-Mir-210 Ofu-Mir-210 Pab-Mir-210 Pau-Mir-210 Pbv-Mir-210 Pca-Mir-210 Pma-Mir-210 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Sma-Mir-210 Snu-Mir-210 Spt-Mir-210 Tgu-Mir-210 Tni-Mir-210 Tur-Mir-210-P22 War-Mir-210 Xtr-Mir-210

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030731.1: 2480360-2480422 [+] UCSC Ensembl

Seed

UGUGCGU

Precursor
(pre-Mir +30nt flank)

CGGUACGGACAGACUCUCCAGAUGCAGGUGAGCCACUGACUAACGCACAUUGCGCUGCUGCUAAAAUGCCACUGUGCGUGUGACAGCGGCUAACCAGCAUCUAGGAAUACCGUCCAUUGAAUU

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Structure

        10          20        30        40        50        60 
CGGUACGGACAGACUCU-  -|     A   G    A   ACUA       U  CGCUGCUG 
                  CC AGAUGC GGU AGCC CUG    ACGCACA UG        \
                  GG UCUACG CCA UCGG GAC    UGCGUGU AC        C
UUAAGUUACCUGCCAUAA  A^     A   A    C   AGUG       C  CGUAAAAU 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-210-P22_5p*

mirBase accession

None

Sequence

0- AGCCACUGACUAACGCACAUUG -22

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Mature sequence

Xla-Mir-210-P22_3p

mirBase accession

None

Sequence

41- CUGUGCGUGUGACAGCGGCUAA -63

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