MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-133-P2a-v2

Family name MIR-133 (all species)
Seed UGGUCCC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-133-P1-v1  Tni-Mir-133-P1-v2  Tni-Mir-133-P2a-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P2-v1  Aca-Mir-133-P2-v2  Ami-Mir-133-P2-v1  Ami-Mir-133-P2-v2  Asu-Mir-133  Bge-Mir-133  Bta-Mir-133-P2-v1  Bta-Mir-133-P2-v2  Cbr-Mir-133  Cel-Mir-133  Cfa-Mir-133-P2-v1  Cfa-Mir-133-P2-v2  Cgi-Mir-133  Cin-Mir-133  Cli-Mir-133-P2-v1  Cli-Mir-133-P2-v2  Cpi-Mir-133-P2-v1  Cpi-Mir-133-P2-v2  Cpo-Mir-133-P2-v1  Cpo-Mir-133-P2-v2  Cte-Mir-133  Dan-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dno-Mir-133-P2-v1  Dno-Mir-133-P2-v2  Dpu-Mir-133  Dre-Mir-133-P2a-v1  Dre-Mir-133-P2a-v2  Dsi-Mir-133  Dya-Mir-133  Efe-Mir-133  Esc-Mir-133  Ete-Mir-133-P2-v1  Ete-Mir-133-P2-v2  Gga-Mir-133-P2-v1  Gga-Mir-133-P2-v2  Gja-Mir-133-P2-v1  Gja-Mir-133-P2-v2  Gmo-Mir-133-P2a-v1  Gmo-Mir-133-P2a-v2  Hme-Mir-133  Hsa-Mir-133-P2-v1  Hsa-Mir-133-P2-v2  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P2  Lgi-Mir-133  Loc-Mir-133-P2-v1  Loc-Mir-133-P2-v2  Mal-Mir-133-P2a-v1  Mal-Mir-133-P2a-v2  Mdo-Mir-133-P2-v1  Mdo-Mir-133-P2-v2  Mml-Mir-133-P2-v1  Mml-Mir-133-P2-v2  Mmu-Mir-133-P2-v1  Mmu-Mir-133-P2-v2  Mun-Mir-133-P2-v1  Mun-Mir-133-P2-v2  Oan-Mir-133-P2-v1  Oan-Mir-133-P2-v2  Obi-Mir-133  Ocu-Mir-133-P2-v1  Ocu-Mir-133-P2-v2  Ovu-Mir-133  Pbv-Mir-133-P2-v1  Pbv-Mir-133-P2-v2  Pma-Mir-133-o2-v1  Pma-Mir-133-o2-v2  Rno-Mir-133-P2-v1  Rno-Mir-133-P2-v2  Sha-Mir-133-P2-v1  Sha-Mir-133-P2-v2  Spt-Mir-133-P2  Spu-Mir-133  Tca-Mir-133  Tgu-Mir-133-P2-v1  Tgu-Mir-133-P2-v2  Xbo-Mir-133  Xtr-Mir-133-P2-v1  Xtr-Mir-133-P2-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
14: 5700455-5700514 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGCAGCUGAAGCAGCACGCCUUGCUGUGGCUGGUCAAACGGAACCAAGUCAGGUGUUUCUGUGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGGCACACAGCGGCGUGGAAGCCA
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Structure
        10         20         30        40        50         
GGUGCAGCUGAAGCAGCAC-   U-|  U         CA  C  A       CAGGUGU 
                    GCC  UGC GUGGCUGGU  AA GG ACCAAGU       U
                    CGG  GCG CAUCGACCA  UU CC UGGUUUG       U
ACCGAAGGUGCGGCGACACA   CU^  U         AC  C  C       GAGUGUC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-133-P2a-v2_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUGGUCAAACGGAACCAAGU -21
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Mature sequence

Tni-Mir-133-P2a-v2_3p (predicted)

mirBase accessionNone
Sequence
39- UUGGUCCCCUUCAACCAGCUA -60
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