MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-133-P2a

Family name MIR-133 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-133-P1-v1  Tni-Mir-133-P2a-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P2-v1  Aga-Mir-133  Ami-Mir-133-P2-v1  Asu-Mir-133  Bge-Mir-133  Bta-Mir-133-P2-v1  Cbr-Mir-133  Cel-Mir-133  Cfa-Mir-133-P2-v1  Cin-Mir-133  Cja-Mir-133-P2  Cli-Mir-133-P2-v1  Cpi-Mir-133-P2-v1  Cpo-Mir-133-P2-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dno-Mir-133-P2-v1  Dpu-Mir-133  Dre-Mir-133-P2a-v1  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Eca-Mir-133-P2-v1  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Ete-Mir-133-P2-v1  Gga-Mir-133-P2-v1  Gja-Mir-133-P2-v1  Gmo-Mir-133-P2a-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Hsa-Mir-133-P2-v1  Isc-Mir-133  Laf-Mir-133-P2  Lan-Mir-133  Lch-Mir-133-P2  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Loc-Mir-133-P2-v1  Mal-Mir-133-P2a-v1  Mdo-Mir-133-P2-v1  Mgi-Mir-133  Mml-Mir-133-P2-v1  Mmr-Mir-133-P2-v1  Mmu-Mir-133-P2-v1  Mom-Mir-133  Mun-Mir-133-P2-v1  Oan-Mir-133-P2-v1  Obi-Mir-133  Ocu-Mir-133-P2-v1  Ofu-Mir-133  Ovu-Mir-133  Pab-Mir-133-P2  Pau-Mir-133  Pbv-Mir-133-P2-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pma-Mir-133-o2-v1  Pve-Mir-133  Rno-Mir-133-P2-v1  Rph-Mir-133  Sha-Mir-133-P2-v1  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P2  Spu-Mir-133  Tca-Mir-133  Tgu-Mir-133-P2-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xtr-Mir-133-P2-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 14: 5700455-5700514 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P2a-v2)		 Mir-1-P2a 14: 5699806-5699865 [+] UCSC Ensembl
Mir-133-P2a-v1 14: 5700455-5700514 [+] UCSC Ensembl
Mir-133-P2a-v2 14: 5700455-5700514 [+] UCSC Ensembl
Variant

Tni-Mir-133-P2a-v2
Seed UGGUCCC
Precursor
(pre-Mir +30nt flank)		 
GGUGCAGCUGAAGCAGCACGCCUUGCUGUGGCUGGUCAAACGGAACCAAGUCAGGUGUUUCUGUGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGGCACACAGCGGCGUGGAAGCCA
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Structure
        10         20         30        40        50         
GGUGCAGCUGAAGCAGCAC-   U-|  U         CA  C  A       CAGGUGU 
                    GCC  UGC GUGGCUGGU  AA GG ACCAAGU       U
                    CGG  GCG CAUCGACCA  UU CC UGGUUUG       U
ACCGAAGGUGCGGCGACACA   CU^  U         AC  C  C       GAGUGUC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-133-P2a-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCUGGUCAAACGGAACCAAGU -21
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Mature sequence

Tni-Mir-133-P2a-v2_3p (predicted)
mirBase accessionNone
Sequence 
39- UUGGUCCCCUUCAACCAGCUA -60
Get sequence
Variant

Tni-Mir-133-P2a-v1
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
GGUGCAGCUGAAGCAGCACGCCUUGCUGUGGCUGGUCAAACGGAACCAAGUCAGGUGUUUCUGUGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGGCACACAGCGGCGUGGAAGCCA
Get precursor sequence
Structure
        10         20         30        40        50         
GGUGCAGCUGAAGCAGCAC-   U-|  U         CA  C  A     GU AGGUGU 
                    GCC  UGC GUGGCUGGU  AA GG ACCAA  C      U
                    CGG  GCG CAUCGACCA  UU CC UGGUU  G      U
ACCGAAGGUGCGGCGACACA   CU^  U         AC  C  C     UG AGUGUC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-133-P2a-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCUGGUCAAACGGAACCAAGUC -22
Get sequence
Mature sequence

Tni-Mir-133-P2a-v1_3p (predicted)
mirBase accessionNone
Sequence 
38- UUUGGUCCCCUUCAACCAGCUA -60
Get sequence