MirGeneDB 3.0

MirGeneDB ID

Tgu-Mir-489

Family name MIR-489 (all species)
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-489
Paralogues Tgu-Mir-489-v1 
Orthologues Cfa-Mir-489  Cja-Mir-489  Dno-Mir-489  Eca-Mir-489  Gja-Mir-489  Laf-Mir-489  Lch-Mir-489  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(TaeGut1_add)
2: 24306045-24306106 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v2)
Mir-489-v2 2: 24306045-24306106 [-] UCSC Ensembl
Mir-489-v1 2: 24306046-24306105 [-] UCSC Ensembl
Variant

Tgu-Mir-489-v2

Seed GACAUCA
Precursor
(pre-Mir +30nt flank)
AUGUCAGUCAUUUGUCACGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGGACUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGGGACAUCACUUAAACUG
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Structure
        10          20        30        40        50        60
AUGUCAGUCAUUUGUCAC--|UG UG C    UG             C      UACUUGG 
                    G  G  G UUGG  GUCGUAUGUAUGA GUCAUU       A
                    C  C  C AAUC  CGGCAUGUAUACU CAGUGA       C
GUCAAAUUCACUACAGGGUA^GU GU A    GU             A      GGAUUUU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-489-v2_5p*

mirBase accessionMIMAT0027024
Sequence
0- UGGUCGUAUGUAUGACGUCAUU -22
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Mature sequence

Tgu-Mir-489-v2_3p

mirBase accessionMIMAT0014618
Sequence
40- UGACAUCAUAUGUACGGCUGCU -62
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Variant

Tgu-Mir-489-v1

Seed UGACAUC
Precursor
(pre-Mir +30nt flank)
UGUCAGUCAUUUGUCACGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGGACUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGGGACAUCACUUAAACU
Get precursor sequence
Structure
        10          20        30        40        50         
UGUCAGUCAUUUGUCAC--|UG UG C    UG             C       ACUUGG 
                   G  G  G UUGG  GUCGUAUGUAUGA GUCAUUU      A
                   C  C  C AAUC  CGGCAUGUAUACU CAGUGAG      C
UCAAAUUCACUACAGGGUA^GU GU A    GU             A       GAUUUU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-489-v1_5p*

mirBase accessionMIMAT0027024
Sequence
0- GGUCGUAUGUAUGACGUCAUUU -22
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Mature sequence

Tgu-Mir-489-v1_3p

mirBase accessionMIMAT0014618
Sequence
38- GUGACAUCAUAUGUACGGCUGC -60
Get sequence