MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-455

Family name MIR-455 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues
Orthologues Aca-Mir-455-v1  Ami-Mir-455-v1  Bta-Mir-455-v1  Cfa-Mir-455-v1  Cja-Mir-455-v1  Cli-Mir-455-v1  Cmi-Mir-455-v1  Cpi-Mir-455-v1  Cpo-Mir-455-v1  Dno-Mir-455-v1  Ebu-Mir-455-v1  Eca-Mir-455-v1  Ete-Mir-455-v1  Gga-Mir-455-v1  Gja-Mir-455  Hsa-Mir-455-v1  Laf-Mir-455-v1  Lch-Mir-455  Loc-Mir-455-v1  Mdo-Mir-455-v1  Mml-Mir-455-v1  Mmr-Mir-455-v1  Mmu-Mir-455-v1  Mun-Mir-455  Oan-Mir-455-v1  Ocu-Mir-455-v1  Pab-Mir-455-v1  Pbv-Mir-455  Pma-Mir-455  Rno-Mir-455-v1  Sha-Mir-455-v1  Spt-Mir-455  Tgu-Mir-455-v1  Xtr-Mir-455 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01000216.1: 682947-683004 [+]
Clustered miRNAs
(< 50kb from Mir-455-v1)		 Mir-455-v2 BFAA01000216.1: 682946-683005 [+]
Mir-455-v3 BFAA01000216.1: 682946-683005 [+]
Mir-455-v1 BFAA01000216.1: 682947-683004 [+]
Variant

Sto-Mir-455-v1
Seed AUGUGCC
Precursor
(pre-Mir +30nt flank)		 
GCCGACGCAGCUCGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCUUUGUUCAUCACUUGCA
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Structure
        10          20        30        40        50        
GCCGACGCAGCUCGAUC-  -|  U UG  G          U      A   C UGGAA 
                  CC UGG G  AG GUAUGUGCCC UGGACU CAU G     G
                  GG ACU C  UC CAUAUACGGG ACCUGA GUA C     C
ACGUUCACUACUUGUUUC  A^  C GU  A          U      C   C ACGAC 
      110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Sto-Mir-455-v1_5p
mirBase accessionNone
Sequence 
0- UAUGUGCCCUUGGACUACAUCG -22
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Star sequence

Sto-Mir-455-v1_3p*
mirBase accessionNone
Sequence 
36- AUGCAGUCCAUGGGCAUAUACA -58
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Variant

Sto-Mir-455-v2
Seed CAGUCCA
Precursor
(pre-Mir +30nt flank)		 
GGCCGACGCAGCUCGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCUUUGUUCAUCACUUGCAC
Get precursor sequence
Structure
        10          20        30        40        50         
GGCCGACGCAGCUCGAU--| C   U UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCC UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CACGUUCACUACUUGUUUC^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
To
Star sequence

Sto-Mir-455-v2_5p*
mirBase accessionNone
Sequence 
0- GUAUGUGCCCUUGGACUACAU -21
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Mature sequence

Sto-Mir-455-v2_3p
mirBase accessionNone
Sequence 
39- GCAGUCCAUGGGCAUAUACAC -60
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Variant

Sto-Mir-455-v3
Seed GCAGUCC
Precursor
(pre-Mir +30nt flank)		 
GGCCGACGCAGCUCGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCUUUGUUCAUCACUUGCAC
Get precursor sequence
Structure
        10          20        30        40        50         
GGCCGACGCAGCUCGAU--| C   U UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCC UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CACGUUCACUACUUGUUUC^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUGUG in loop
Tissue expression
- +
To
Star sequence

Sto-Mir-455-v3_5p*
mirBase accessionNone
Sequence 
0- GUAUGUGCCCUUGGACUACAUC -22
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Mature sequence

Sto-Mir-455-v3_3p
mirBase accessionNone
Sequence 
38- UGCAGUCCAUGGGCAUAUACAC -60
Get sequence