MirGeneDB ID | Pbv-Mir-455 |
Family name |
MIR-455 (all species) |
Seed |
AUGUGCC |
Species |
Burmese python (Python bivittatus) |
MiRBase ID |
pbv-mir-455
|
Paralogues |
|
Orthologues |
Aca-Mir-455
Ami-Mir-455
Bta-Mir-455
Cfa-Mir-455
Cli-Mir-455
Cmi-Mir-455
Cpi-Mir-455
Cpo-Mir-455
Dno-Mir-455
Dre-Mir-455-P1
Dre-Mir-455-P2
Ebu-Mir-455-v1
Ebu-Mir-455-v2
Ete-Mir-455
Gga-Mir-455
Gja-Mir-455
Gmo-Mir-455-P1
Gmo-Mir-455-P2
Hsa-Mir-455
Lch-Mir-455
Loc-Mir-455
Mal-Mir-455-P1
Mal-Mir-455-P2
Mdo-Mir-455
Mml-Mir-455
Mmu-Mir-455
Mun-Mir-455
Oan-Mir-455
Ocu-Mir-455
Pma-Mir-455
Rno-Mir-455
Sha-Mir-455
Spt-Mir-455
Sto-Mir-455
Tgu-Mir-455
Tni-Mir-455-P1
Tni-Mir-455-P2
Xla-Mir-455-P3
Xla-Mir-455-P4
Xtr-Mir-455
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000186305.2_Python_molurus_bivittatus) |
KE954676.1: 196983-197040 [-]
|
Precursor (pre-Mir +30nt flank) |
GUGCAAAGCACAUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAAAUAUCACCAUGCAGUCCAUGGGCAUAUACACUUGCCCCAAGGUUUCUUUCGUCACGGUCG
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGCAAAGCACAUGAUC- -| U UG G U A C UGGAA
CC UGG G AG GUAUGUGCCC UGGACU CAU G A
GG ACC C UC CAUAUACGGG ACCUGA GUA C A
GCUGGCACUGCUUUCUUU A^ C GU A U C C ACUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There are mutliple Dicer cuts on the 3p arm. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pbv-Mir-455_5p |
mirBase accession | MIMAT0039057 |
Sequence |
0- UAUGUGCCCUUGGACUACAUCG -22
Get sequence
|
Star sequence |
Pbv-Mir-455_3p* |
mirBase accession | MIMAT0039058 |
Sequence |
36- AUGCAGUCCAUGGGCAUAUACA -58
Get sequence
|