MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-455

Family name MIR-455 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-455
Paralogues
Orthologues Aca-Mir-455-v1  Ami-Mir-455-v1  Bta-Mir-455-v1  Cfa-Mir-455-v1  Cja-Mir-455-v1  Cli-Mir-455-v1  Cmi-Mir-455-v1  Cpi-Mir-455-v1  Cpo-Mir-455-v1  Dno-Mir-455-v1  Ebu-Mir-455-v1  Eca-Mir-455-v1  Ete-Mir-455-v1  Gga-Mir-455-v1  Gja-Mir-455  Hsa-Mir-455-v1  Laf-Mir-455-v1  Lch-Mir-455  Loc-Mir-455-v1  Mdo-Mir-455-v1  Mml-Mir-455-v1  Mmr-Mir-455-v1  Mmu-Mir-455-v1  Mun-Mir-455  Oan-Mir-455-v1  Ocu-Mir-455-v1  Pab-Mir-455-v1  Pbv-Mir-455  Pma-Mir-455  Sha-Mir-455-v1  Spt-Mir-455  Sto-Mir-455-v1  Tgu-Mir-455-v1  Xtr-Mir-455 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr5: 79097218-79097274 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-455-v1)		 Mir-455-v2 chr5: 79097217-79097275 [+] UCSC Ensembl
Mir-455-v3 chr5: 79097217-79097275 [+] UCSC Ensembl
Mir-455-v1 chr5: 79097218-79097274 [+] UCSC Ensembl
Variant

Rno-Mir-455-v1
Seed AUGUGCC
Precursor
(pre-Mir +30nt flank)		 
UGUCCUGUGCUGCCCUCCCUGGUGUGAGCGUAUGUGCCUUUGGACUACAUCGUGGACGCAGCACCAUGCAGUCCACGGGCAUAUACACUUGCCUCAAGGUCUAUGUCAUCGAGGACC
Get precursor sequence
Structure
        10          20        30        40        50        
UGUCCUGUGCUGCCCUC-  -|  U UG  C          U      A   C UGGAC 
                  CC UGG G  AG GUAUGUGCCU UGGACU CAU G     \
                  GG ACU C  UC CAUAUACGGG ACCUGA GUA C     G
CCAGGAGCUACUGUAUCU  A^  C GU  A          C      C   C ACGAC 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-455-v1_5p
mirBase accessionMIMAT0005316
Sequence 
0- UAUGUGCCUUUGGACUACAUCG -22
Get sequence
Proposed targets microrna.org: MIMAT0005316
TargetScanVert: rno-miR-455-5p
miRDB: MIMAT0005316
Star sequence

Rno-Mir-455-v1_3p*
mirBase accessionMIMAT0017308
Sequence 
35- AUGCAGUCCACGGGCAUAUACA -57
Get sequence
Proposed targets TargetScanVert: rno-miR-455-3p
miRDB: MIMAT0017308
Variant

Rno-Mir-455-v2
Seed CAGUCCA
Precursor
(pre-Mir +30nt flank)		 
CUGUCCUGUGCUGCCCUCCCUGGUGUGAGCGUAUGUGCCUUUGGACUACAUCGUGGACGCAGCACCAUGCAGUCCACGGGCAUAUACACUUGCCUCAAGGUCUAUGUCAUCGAGGACCC
Get precursor sequence
Structure
        10          20        30        40        50         
CUGUCCUGUGCUGCCCU--| C   U UG  C          U      A   CGUGGAC 
                   CC UGG G  AG GUAUGUGCCU UGGACU CAU       \
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       G
CCCAGGAGCUACUGUAUCU^ A   C GU  A          C      C   CCACGAC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-455-v2_5p*
mirBase accessionMIMAT0005316
Sequence 
0- GUAUGUGCCUUUGGACUACAU -21
Get sequence
Proposed targets microrna.org: MIMAT0005316
TargetScanVert: rno-miR-455-5p
miRDB: MIMAT0005316
Mature sequence

Rno-Mir-455-v2_3p
mirBase accessionMIMAT0017308
Sequence 
38- GCAGUCCACGGGCAUAUACAC -59
Get sequence
Proposed targets TargetScanVert: rno-miR-455-3p
miRDB: MIMAT0017308
Variant

Rno-Mir-455-v3
Seed GCAGUCC
Precursor
(pre-Mir +30nt flank)		 
CUGUCCUGUGCUGCCCUCCCUGGUGUGAGCGUAUGUGCCUUUGGACUACAUCGUGGACGCAGCACCAUGCAGUCCACGGGCAUAUACACUUGCCUCAAGGUCUAUGUCAUCGAGGACCC
Get precursor sequence
Structure
        10          20        30        40        50         
CUGUCCUGUGCUGCCCU--| C   U UG  C          U      A   CGUGGAC 
                   CC UGG G  AG GUAUGUGCCU UGGACU CAU       \
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       G
CCCAGGAGCUACUGUAUCU^ A   C GU  A          C      C   CCACGAC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUGUG in loop
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-455-v3_5p*
mirBase accessionMIMAT0005316
Sequence 
0- GUAUGUGCCUUUGGACUACAUC -22
Get sequence
Proposed targets microrna.org: MIMAT0005316
TargetScanVert: rno-miR-455-5p
miRDB: MIMAT0005316
Mature sequence

Rno-Mir-455-v3_3p
mirBase accessionMIMAT0017308
Sequence 
37- UGCAGUCCACGGGCAUAUACAC -59
Get sequence
Proposed targets TargetScanVert: rno-miR-455-3p
miRDB: MIMAT0017308