MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-455

Family name MIR-455 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-455
Paralogues
Orthologues Aca-Mir-455-v1  Bta-Mir-455-v1  Cfa-Mir-455-v1  Cja-Mir-455-v1  Cli-Mir-455-v1  Cmi-Mir-455-v1  Cpi-Mir-455-v1  Cpo-Mir-455-v1  Dno-Mir-455-v1  Ebu-Mir-455-v1  Eca-Mir-455-v1  Ete-Mir-455-v1  Gga-Mir-455-v1  Gja-Mir-455  Hsa-Mir-455-v1  Laf-Mir-455-v1  Lch-Mir-455  Loc-Mir-455-v1  Mdo-Mir-455-v1  Mml-Mir-455-v1  Mmr-Mir-455-v1  Mmu-Mir-455-v1  Mun-Mir-455  Oan-Mir-455-v1  Ocu-Mir-455-v1  Pab-Mir-455-v1  Pbv-Mir-455  Pma-Mir-455  Rno-Mir-455-v1  Sha-Mir-455-v1  Spt-Mir-455  Sto-Mir-455-v1  Tgu-Mir-455-v1  Xtr-Mir-455 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713629.1: 12996643-12996700 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-455-v1)		 Mir-455-v2 NW_017713629.1: 12996642-12996701 [+] UCSC
Mir-455-v3 NW_017713629.1: 12996642-12996701 [+] UCSC
Mir-455-v1 NW_017713629.1: 12996643-12996700 [+] UCSC
Variant

Ami-Mir-455-v1
Seed AUGUGCC
Precursor
(pre-Mir +30nt flank)		 
GCGGAGUUCUCAUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGUUUAUUUCAUCACGACUG
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Structure
        10          20        30        40        50        
GCGGAGUUCUCAUGAUC-  -|  U UG  G          U      A   C UGGAA 
                  CC UGG G  AG GUAUGUGCCC UGGACU CAU G     G
                  GG ACU C  UC CAUAUACGGG ACCUGA GUA C     C
GUCAGCACUACUUUAUUU  A^  C GU  A          U      C   C ACGAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Ami-Mir-455-v1_5p
mirBase accessionMIMAT0038287
Sequence 
0- UAUGUGCCCUUGGACUACAUCG -22
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Star sequence

Ami-Mir-455-v1_3p*
mirBase accessionMIMAT0038288
Sequence 
36- AUGCAGUCCAUGGGCAUAUACA -58
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Variant

Ami-Mir-455-v2
Seed CAGUCCA
Precursor
(pre-Mir +30nt flank)		 
CGCGGAGUUCUCAUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGUUUAUUUCAUCACGACUGC
Get precursor sequence
Structure
        10          20        30        40        50         
CGCGGAGUUCUCAUGAU--| C   U UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCC UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CGUCAGCACUACUUUAUUU^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
To
Star sequence

Ami-Mir-455-v2_5p*
mirBase accessionMIMAT0038287
Sequence 
0- GUAUGUGCCCUUGGACUACAU -21
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Mature sequence

Ami-Mir-455-v2_3p
mirBase accessionMIMAT0038288
Sequence 
39- GCAGUCCAUGGGCAUAUACAC -60
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Variant

Ami-Mir-455-v3
Seed GCAGUCC
Precursor
(pre-Mir +30nt flank)		 
CGCGGAGUUCUCAUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGUUUAUUUCAUCACGACUGC
Get precursor sequence
Structure
        10          20        30        40        50         
CGCGGAGUUCUCAUGAU--| C   U UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCC UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CGUCAGCACUACUUUAUUU^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUGUG in loop
Tissue expression
- +
To
Star sequence

Ami-Mir-455-v3_5p*
mirBase accessionMIMAT0038287
Sequence 
0- GUAUGUGCCCUUGGACUACAUC -22
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Mature sequence

Ami-Mir-455-v3_3p
mirBase accessionMIMAT0038288
Sequence 
38- UGCAGUCCAUGGGCAUAUACAC -60
Get sequence