| MirGeneDB ID | Xtr-Mir-455 |
|---|
| Family name |
MIR-455 (all species) |
|---|
| Species |
Tropical clawed frog (Xenopus tropicalis) |
|---|
| MiRBase ID |
xtr-mir-455
|
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| Paralogues |
|
|---|
| Orthologues |
Aca-Mir-455-v1
Ami-Mir-455-v1
Bta-Mir-455-v1
Cfa-Mir-455-v1
Cja-Mir-455-v1
Cli-Mir-455-v1
Cmi-Mir-455-v1
Cpi-Mir-455-v1
Cpo-Mir-455-v1
Dno-Mir-455-v1
Dre-Mir-455-P1-v1
Dre-Mir-455-P2-v1
Ebu-Mir-455-v1
Eca-Mir-455-v1
Ete-Mir-455-v1
Gga-Mir-455-v1
Gja-Mir-455
Gmo-Mir-455-P1-v1
Gmo-Mir-455-P2-v1
Hsa-Mir-455-v1
Laf-Mir-455-v1
Lch-Mir-455
Loc-Mir-455-v1
Mal-Mir-455-P1-v1
Mal-Mir-455-P2-v1
Mdo-Mir-455-v1
Mml-Mir-455-v1
Mmr-Mir-455-v1
Mmu-Mir-455-v1
Mun-Mir-455
Oan-Mir-455-v1
Ocu-Mir-455-v1
Pab-Mir-455-v1
Pbv-Mir-455
Pma-Mir-455
Rno-Mir-455-v1
Sha-Mir-455-v1
Spt-Mir-455
Sto-Mir-455-v1
Tgu-Mir-455-v1
Tni-Mir-455-P1-v1
Tni-Mir-455-P2-v1
Xla-Mir-455-P3
Xla-Mir-455-P4
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(xenTro9_add) |
chr8: 2703743-2703800 [+]
UCSC
Ensembl
|
|---|
| Seed |
AUGUGCC |
|---|
Precursor
(pre-Mir +30nt flank) |
CAUAGAAUGCCAUGCUCCCUGGCGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGUUUAUUUCAUCACGGAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUAGAAUGCCAUGCUC- -| C UG G U A C UGGAA
CC UGG G AG GUAUGUGCCC UGGACU CAU G G
GG ACU C UC CAUAUACGGG ACCUGA GUA C C
AGAGGCACUACUUUAUUU A^ C GU A U C C ACGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xtr-Mir-455_5p |
| mirBase accession | MIMAT0003641 |
|---|
| Sequence |
0- UAUGUGCCCUUGGACUACAUCG -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: xtr-miR-455
|
|---|
| Star sequence |
Xtr-Mir-455_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AUGCAGUCCAUGGGCAUAUACA -58
Get sequence
|
|---|
